RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 F5H697 171 aa8.4□□□□□ -1.06
LSM3-201ENST00000306024 TRBV7-3A0A075B6L6 115 aa8.4□□□□□ -1.07
LSM3-201ENST00000306024 PF4V1P10720 104 aa8.4□□□□□ -1.07
LSM3-201ENST00000306024 CARD19Q96LW7 228 aa8.4□□□□□ -1.07
LSM3-201ENST00000306024 H3BMM0 161 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 IGHV3-23P01764 117 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 CRYGCP07315 174 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 SMCPP49901 116 aaPredicted RBP8.39□□□□□ -1.07
LSM3-201ENST00000306024 ATXN8Q156A1 80 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 PVRIGQ6DKI7 326 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 UBE2WQ96B02 151 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 ODF3BA8MYP8 253 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 GAS8-AS1O95177 125 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 IGHV4-31P0DP07 118 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 DYNAPQ8N1N2 210 aa8.39□□□□□ -1.07
LSM3-201ENST00000306024 IGHV3OR16-13A0A075B7E8 117 aa8.38□□□□□ -1.07
LSM3-201ENST00000306024 IGHV3-74A0A0B4J1X5 117 aa8.38□□□□□ -1.07
LSM3-201ENST00000306024 DEFB112Q30KQ8 113 aa8.38□□□□□ -1.07
LSM3-201ENST00000306024 TRPT1Q86TN4 253 aaKnown RBP8.38□□□□□ -1.07
LSM3-201ENST00000306024 MFAP4P55083 255 aa8.38□□□□□ -1.07
LSM3-201ENST00000306024 ITPR3Q14573 2671 aa8.38□□□□□ -1.07
LSM3-201ENST00000306024 SMG1Q96Q15 3661 aaKnown RBP8.38□□□□□ -1.07
LSM3-201ENST00000306024 HLA-DMBP28068 263 aa8.38□□□□□ -1.07
LSM3-201ENST00000306024 MRPL23Q16540 153 aaKnown RBP8.38□□□□□ -1.07
LSM3-201ENST00000306024 FLNAP21333 2647 aaKnown RBP8.37□□□□□ -1.07
LSM3-201ENST00000306024 UNC79Q9P2D8 2635 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 M0QXV9 152 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 ERCC8Q13216 396 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 NDUFA11Q86Y39 141 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 IGHV3-64A0A075B6Q5 118 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 FHL3Q13643 280 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 C2orf66Q6UXQ4 117 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 H3BRN7 92 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 PLEKHB2Q96CS7 222 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 TMEM101Q96IK0 257 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 TMEM126AQ9H061 195 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 PHLDA3Q9Y5J5 127 aa8.37□□□□□ -1.07
LSM3-201ENST00000306024 IGHV4-59P01825 116 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 PMVKQ15126 192 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 Q8N1Y9 231 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 CHCHD5Q9BSY4 110 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 ZMAT4Q9H898 229 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 IGHV3-66A0A0C4DH42 116 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 PAPPA-AS1Q5QFB9 102 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 GATD1Q8NB37 220 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 TRBV6-1A0A0K0K1D8 114 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 LY6LH3BQJ8 138 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 PDE6HQ13956 83 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 Q6ZQT7 251 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 AJUBAQ96IF1 538 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 SMIM2Q9BVW6 85 aa8.36□□□□□ -1.07
LSM3-201ENST00000306024 LINC01548A6NM66 108 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 AVPP01185 164 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 TMEM190Q8WZ59 177 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 IGKV1-17P01599 117 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 IGLV2-23P01705 113 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 TRGV3P03979 118 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 UTP20O75691 2785 aaKnown RBP8.35□□□□□ -1.07
LSM3-201ENST00000306024 CRLF1O75462 422 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 SRD5A1P18405 259 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 CFHR4Q92496 578 aa8.35□□□□□ -1.07
LSM3-201ENST00000306024 IGHV3-49A0A0A0MS15 119 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 INS-IGF2F8WCM5 200 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 ATP6V0E1O15342 81 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 CFC1BP0CG36 223 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 CFC1P0CG37 223 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 RPL11P62913 178 aaKnown RBP8.34□□□□□ -1.07
LSM3-201ENST00000306024 WNK1Q9H4A3 2382 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 TACC2O95359 2948 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 TEX49A0A1B0GTD5 131 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 ZNF491Q8N8L2 437 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 RNF185Q96GF1 192 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 PPDPFQ9H3Y8 114 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 TRAV41A0A0B4J266 112 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 FAM236AA0A1B0GUQ0 79 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 FAM236BA0A1B0GV22 79 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 G3V318 75 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 ZNF80P51504 273 aaPredicted RBP8.34□□□□□ -1.07
LSM3-201ENST00000306024 SUMO2P61956 95 aaKnown RBP8.34□□□□□ -1.07
LSM3-201ENST00000306024 LINC01620Q4KN68 170 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 TNFRSF18Q9Y5U5 241 aa8.34□□□□□ -1.07
LSM3-201ENST00000306024 F8P00451 2351 aa8.34□□□□□ -1.08
LSM3-201ENST00000306024 OR13C6PQ8NH95 151 aa8.33□□□□□ -1.08
LSM3-201ENST00000306024 C21orf62Q9NYP8 219 aa8.33□□□□□ -1.08
LSM3-201ENST00000306024 CRYBG3Q68DQ2 2970 aa8.33□□□□□ -1.08
LSM3-201ENST00000306024 A4D1N5 150 aa8.33□□□□□ -1.08
LSM3-201ENST00000306024 EDA2RQ9HAV5 297 aa8.33□□□□□ -1.08
LSM3-201ENST00000306024 Q8N9W7 124 aa8.33□□□□□ -1.08
LSM3-201ENST00000306024 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.32□□□□□ -1.08
LSM3-201ENST00000306024 IGHV3-11P01762 117 aa8.32□□□□□ -1.08
LSM3-201ENST00000306024 C14orf178Q8N769 122 aaPredicted RBP8.32□□□□□ -1.08
LSM3-201ENST00000306024 NPBQ8NG41 125 aa8.32□□□□□ -1.08
LSM3-201ENST00000306024 VPREB3Q9UKI3 123 aa8.32□□□□□ -1.08
LSM3-201ENST00000306024 UBR5O95071 2799 aaPredicted RBP8.32□□□□□ -1.08
LSM3-201ENST00000306024 TRAV12-3A0A0B4J271 114 aa8.32□□□□□ -1.08
LSM3-201ENST00000306024 GCN1Q92616 2671 aaKnown RBP8.32□□□□□ -1.08
LSM3-201ENST00000306024 TRAV12-1A0A0B4J245 112 aa8.32□□□□□ -1.08
LSM3-201ENST00000306024 IGLC6P0CF74 106 aa8.32□□□□□ -1.08
LSM3-201ENST00000306024 FN1P02751 2386 aaKnown RBP8.31□□□□□ -1.08
LSM3-201ENST00000306024 CD7P09564 240 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms