RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PRR9Q5T870 116 aa12.53□□□□□ -0.4
CPSF4-201ENST00000292476 WFDC3Q8IUB2 231 aa12.53□□□□□ -0.4
CPSF4-201ENST00000292476 ANK2Q01484 3957 aa12.53□□□□□ -0.4
CPSF4-201ENST00000292476 HLA-DRB4P13762 266 aa12.52□□□□□ -0.4
CPSF4-201ENST00000292476 ODF1Q14990 250 aa12.52□□□□□ -0.4
CPSF4-201ENST00000292476 TMEM97Q5BJF2 176 aa12.52□□□□□ -0.4
CPSF4-201ENST00000292476 HLA-DRB4X5D2U9 266 aa12.52□□□□□ -0.4
CPSF4-201ENST00000292476 CCL25O15444 150 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 GAS8-AS1O95177 125 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 ASIPP42127 132 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 HSD52Q0P140 79 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 LAGE3Q14657 143 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 ADAMTSL5Q6ZMM2 481 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 H3BVH4 76 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 FXYD7P58549 80 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 DEFB114Q30KQ6 69 aa12.51□□□□□ -0.41
CPSF4-201ENST00000292476 M0R381 172 aa12.5□□□□□ -0.41
CPSF4-201ENST00000292476 GATA1P15976 413 aaPredicted RBP12.5□□□□□ -0.41
CPSF4-201ENST00000292476 SPAG8Q99932 426 aaPredicted RBP12.5□□□□□ -0.41
CPSF4-201ENST00000292476 C20orf78Q9BR46 151 aa12.5□□□□□ -0.41
CPSF4-201ENST00000292476 A6NDN8 102 aa12.49□□□□□ -0.41
CPSF4-201ENST00000292476 DUSP14O95147 198 aaKnown RBP12.49□□□□□ -0.41
CPSF4-201ENST00000292476 PPP1R17O96001 155 aa12.49□□□□□ -0.41
CPSF4-201ENST00000292476 SMIM17P0DL12 118 aa12.49□□□□□ -0.41
CPSF4-201ENST00000292476 NSUN5P1Q3KNT7 163 aa12.49□□□□□ -0.41
CPSF4-201ENST00000292476 DPH3P1Q9H4G8 78 aa12.49□□□□□ -0.41
CPSF4-201ENST00000292476 DKK2Q9UBU2 259 aa12.49□□□□□ -0.41
CPSF4-201ENST00000292476 NXPH4O95158 308 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 IGKCP01834 107 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 ZNF688P0C7X2 276 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 ODF3Q96PU9 254 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 SMIM2Q9BVW6 85 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 HIGD1BQ9P298 99 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 ADARB2-AS1A8MUL3 147 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 DPM2O94777 84 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 PRSS1P07477 247 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 VAMP3Q15836 100 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 C18orf15Q96N68 181 aa12.48□□□□□ -0.41
CPSF4-201ENST00000292476 K7EP13 123 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 S100A4P26447 101 aaKnown RBP12.47□□□□□ -0.41
CPSF4-201ENST00000292476 CMC4P56277 68 aaPredicted RBP12.47□□□□□ -0.41
CPSF4-201ENST00000292476 ORMDL2Q53FV1 153 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 FOXI2Q6ZQN5 318 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 Q6ZVH6 145 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 TMEM61Q8N0U2 210 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 POM121L12Q8N7R1 296 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 HHLA3Q9XRX5 114 aa12.47□□□□□ -0.41
CPSF4-201ENST00000292476 KLLNB2CW77 178 aa12.46□□□□□ -0.41
CPSF4-201ENST00000292476 ANXA2RQ3ZCQ2 193 aa12.46□□□□□ -0.41
CPSF4-201ENST00000292476 PHLDA3Q9Y5J5 127 aa12.46□□□□□ -0.41
CPSF4-201ENST00000292476 SELENOKQ9Y6D0 94 aa12.46□□□□□ -0.41
CPSF4-201ENST00000292476 TRAV12-1A0A0B4J245 112 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 A0A0J9YX75 114 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 H3BRM9 83 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 PF4P02776 101 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 KRTAP10-3P60369 221 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 CD300EQ496F6 205 aaPredicted RBP12.45□□□□□ -0.42
CPSF4-201ENST00000292476 HIST2H2BDQ6DRA6 164 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 Q6ZQT7 251 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 OR4C5Q8NGB2 326 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 AP1S3Q96PC3 154 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 SUMO2P61956 95 aaKnown RBP12.45□□□□□ -0.42
CPSF4-201ENST00000292476 RPL32P62910 135 aaKnown RBP12.45□□□□□ -0.42
CPSF4-201ENST00000292476 SHISA2Q6UWI4 295 aa12.45□□□□□ -0.42
CPSF4-201ENST00000292476 A0A087WX48 190 aa12.44□□□□□ -0.42
CPSF4-201ENST00000292476 TRAV26-2A0A0B4J265 109 aa12.44□□□□□ -0.42
CPSF4-201ENST00000292476 C7orf71A4D174 169 aa12.44□□□□□ -0.42
CPSF4-201ENST00000292476 F6UB75 175 aa12.44□□□□□ -0.42
CPSF4-201ENST00000292476 PLNP26678 52 aa12.44□□□□□ -0.42
CPSF4-201ENST00000292476 RNASE4P34096 147 aaKnown RBP12.44□□□□□ -0.42
CPSF4-201ENST00000292476 NMUP48645 174 aa12.44□□□□□ -0.42
CPSF4-201ENST00000292476 CBY3A6NI87 242 aa12.43□□□□□ -0.42
CPSF4-201ENST00000292476 LINC01549A6NIU2 74 aa12.43□□□□□ -0.42
CPSF4-201ENST00000292476 SAP30O75446 220 aa12.43□□□□□ -0.42
CPSF4-201ENST00000292476 RASL10AQ92737 203 aa12.43□□□□□ -0.42
CPSF4-201ENST00000292476 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.42□□□□□ -0.42
CPSF4-201ENST00000292476 RNASE3P12724 160 aaKnown RBP12.42□□□□□ -0.42
CPSF4-201ENST00000292476 PCP2Q8IVA1 136 aa12.42□□□□□ -0.42
CPSF4-201ENST00000292476 TOMM6Q96B49 74 aa12.42□□□□□ -0.42
CPSF4-201ENST00000292476 CITED1Q99966 193 aa12.42□□□□□ -0.42
CPSF4-201ENST00000292476 DEFB131AP59861 70 aa12.41□□□□□ -0.42
CPSF4-201ENST00000292476 C9orf118A6NHY6 69 aa12.4□□□□□ -0.42
CPSF4-201ENST00000292476 J3KRW8 73 aa12.4□□□□□ -0.42
CPSF4-201ENST00000292476 IGLV1-51P01701 117 aa12.4□□□□□ -0.42
CPSF4-201ENST00000292476 ZNF256Q9Y2P7 627 aaPredicted RBP12.4□□□□□ -0.42
CPSF4-201ENST00000292476 CBY1Q9Y3M2 126 aa12.4□□□□□ -0.42
CPSF4-201ENST00000292476 H7C1H1 209 aa12.39□□□□□ -0.43
CPSF4-201ENST00000292476 INSL3P51460 131 aa12.39□□□□□ -0.43
CPSF4-201ENST00000292476 DEFB1P60022 68 aa12.39□□□□□ -0.43
CPSF4-201ENST00000292476 ZC2HC1BQ5TFG8 222 aa12.39□□□□□ -0.43
CPSF4-201ENST00000292476 MRPL35Q9NZE8 188 aaKnown RBP12.39□□□□□ -0.43
CPSF4-201ENST00000292476 F8VRH5 84 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 CDKN1BP46527 198 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 AMMECR1LQ6DCA0 310 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 FAM159AQ6UWV7 190 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 C14orf178Q8N769 122 aaPredicted RBP12.38□□□□□ -0.43
CPSF4-201ENST00000292476 LINC00482Q8N8I6 264 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 CLUHP3Q96NS8 147 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 FAM110AQ9BQ89 295 aa12.38□□□□□ -0.43
CPSF4-201ENST00000292476 MAP6D1Q9H9H5 199 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms