RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HLA-DRB4X5D2U9 266 aa11.36□□□□□ -0.59
SF3B4-201ENST00000271628 PRSS47A8MTI9 375 aa11.35□□□□□ -0.59
SF3B4-201ENST00000271628 M0R381 172 aa11.35□□□□□ -0.59
SF3B4-201ENST00000271628 SPINK13Q1W4C9 94 aa11.35□□□□□ -0.59
SF3B4-201ENST00000271628 AMTNQ6UX39 209 aa11.35□□□□□ -0.59
SF3B4-201ENST00000271628 Q8N8P6 123 aa11.35□□□□□ -0.59
SF3B4-201ENST00000271628 A8MTW9 85 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 TRAV12-2A0A075B6T6 113 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 CBY3A6NI87 242 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 H3BMM0 161 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 CD7P09564 240 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 DPH3P1Q9H4G8 78 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 ZMAT4Q9H898 229 aa11.34□□□□□ -0.59
SF3B4-201ENST00000271628 ZNF256Q9Y2P7 627 aaPredicted RBP11.34□□□□□ -0.59
SF3B4-201ENST00000271628 A6NDN8 102 aa11.33□□□□□ -0.6
SF3B4-201ENST00000271628 HSD52Q0P140 79 aa11.33□□□□□ -0.6
SF3B4-201ENST00000271628 AMMECR1LQ6DCA0 310 aa11.33□□□□□ -0.6
SF3B4-201ENST00000271628 OR2K2Q8NGT1 345 aa11.33□□□□□ -0.6
SF3B4-201ENST00000271628 MRAP2Q96G30 205 aa11.33□□□□□ -0.6
SF3B4-201ENST00000271628 MAP6D1Q9H9H5 199 aa11.33□□□□□ -0.6
SF3B4-201ENST00000271628 IGHV1OR15-1A0A075B7D0 117 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 KNCNA6PVL3 124 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 INAFM1C9JVW0 142 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 GAS8-AS1O95177 125 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 AP1S3Q96PC3 154 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 DKK2Q9UBU2 259 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 IGLV2-18A0A075B6J9 118 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 ATP5LO75964 103 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 NXPH4O95158 308 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 RNASE8Q8TDE3 154 aaKnown RBP11.32□□□□□ -0.6
SF3B4-201ENST00000271628 C18orf15Q96N68 181 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 NOTCH2Q04721 2471 aa11.32□□□□□ -0.6
SF3B4-201ENST00000271628 PRSS1P07477 247 aa11.31□□□□□ -0.6
SF3B4-201ENST00000271628 ODF1Q14990 250 aa11.31□□□□□ -0.6
SF3B4-201ENST00000271628 H3BRM9 83 aa11.31□□□□□ -0.6
SF3B4-201ENST00000271628 AGRNO00468 2067 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 GATA1P15976 413 aaPredicted RBP11.3□□□□□ -0.6
SF3B4-201ENST00000271628 NMUP48645 174 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 CMC4P56277 68 aaPredicted RBP11.3□□□□□ -0.6
SF3B4-201ENST00000271628 ERASQ7Z444 233 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 TMEM158Q8WZ71 300 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 CLUHP3Q96NS8 147 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 HHLA3Q9XRX5 114 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 SORL1Q92673 2214 aa11.3□□□□□ -0.6
SF3B4-201ENST00000271628 TRGV11A0A075B6L2 103 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 IGHV3-16A0A0C4DH30 117 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 IGKCP01834 107 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 SMIM17P0DL12 118 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 Q8N1Y9 231 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 C14orf178Q8N769 122 aaPredicted RBP11.29□□□□□ -0.6
SF3B4-201ENST00000271628 NRACQ8N912 160 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 TRAV8-6A0A0B4J262 113 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 RBX1P62877 108 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 LAGE3Q14657 143 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 NDUFA11Q86Y39 141 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 PCP2Q8IVA1 136 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 SYT8Q8NBV8 401 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 C9orf85Q96MD7 179 aa11.29□□□□□ -0.6
SF3B4-201ENST00000271628 ADARB2-AS1A8MUL3 147 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 PPP1R17O96001 155 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 NSUN5P1Q3KNT7 163 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 C9orf118A6NHY6 69 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 SPRY2O43597 315 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 SAP30O75446 220 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 DPM2O94777 84 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 HIGD1BQ9P298 99 aa11.28□□□□□ -0.6
SF3B4-201ENST00000271628 TRAV26-2A0A0B4J265 109 aa11.27□□□□□ -0.61
SF3B4-201ENST00000271628 OR11H12B2RN74 326 aa11.27□□□□□ -0.61
SF3B4-201ENST00000271628 POM121L12Q8N7R1 296 aa11.27□□□□□ -0.61
SF3B4-201ENST00000271628 MDFICQ9P1T7 246 aa11.27□□□□□ -0.61
SF3B4-201ENST00000271628 ODF3L2Q3SX64 289 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 RBMY1BA6NDE4 496 aaKnown RBP11.26□□□□□ -0.61
SF3B4-201ENST00000271628 RBMY1EA6NEQ0 496 aaKnown RBP11.26□□□□□ -0.61
SF3B4-201ENST00000271628 GAGE10A6NGK3 116 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 CRLF1O75462 422 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 RBMY1DP0C7P1 496 aaKnown RBP11.26□□□□□ -0.61
SF3B4-201ENST00000271628 GTF2H5Q6ZYL4 71 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 STHQ8IWL8 128 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 C20orf78Q9BR46 151 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 CST9LQ9H4G1 147 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 KIF25-AS1Q9Y6Z4 181 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 MUC4Q99102 2169 aa11.26□□□□□ -0.61
SF3B4-201ENST00000271628 GAGE12BA1L429 117 aa11.25□□□□□ -0.61
SF3B4-201ENST00000271628 IGLV1-51P01701 117 aa11.25□□□□□ -0.61
SF3B4-201ENST00000271628 MGPP08493 103 aa11.25□□□□□ -0.61
SF3B4-201ENST00000271628 TCTAP57738 103 aa11.25□□□□□ -0.61
SF3B4-201ENST00000271628 SETD2Q9BYW2 2564 aaPredicted RBP11.24□□□□□ -0.61
SF3B4-201ENST00000271628 K7EMI3 77 aa11.24□□□□□ -0.61
SF3B4-201ENST00000271628 FAM110AQ9BQ89 295 aa11.24□□□□□ -0.61
SF3B4-201ENST00000271628 SETXQ7Z333 2677 aaKnown RBP11.24□□□□□ -0.61
SF3B4-201ENST00000271628 RBMY1A1P0DJD3 496 aaKnown RBP11.24□□□□□ -0.61
SF3B4-201ENST00000271628 RBMY1CP0DJD4 496 aa11.24□□□□□ -0.61
SF3B4-201ENST00000271628 RBMY1FQ15415 496 aaKnown RBP11.24□□□□□ -0.61
SF3B4-201ENST00000271628 WNK1Q9H4A3 2382 aa11.24□□□□□ -0.61
SF3B4-201ENST00000271628 NSD1Q96L73 2696 aaPredicted RBP11.23□□□□□ -0.61
SF3B4-201ENST00000271628 IGKV2D-26A0A0A0MRZ7 120 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 SUMO2P61956 95 aaKnown RBP11.23□□□□□ -0.61
SF3B4-201ENST00000271628 ZC2HC1BQ5TFG8 222 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 RASL10AQ92737 203 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 LINC00467Q9BRT7 94 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms