RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 TRAV12-3A0A0B4J271 114 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 SMIM20Q8N5G0 67 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 BRI3O95415 125 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 PRSS1P07477 247 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 DEFB113Q30KQ7 82 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 KHDC1LQ5JSQ8 128 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 DCANP1Q8TF63 244 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 RNF183Q96D59 192 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 TTTY13Q9BZ97 58 aa11.84□□□□□ -0.51
LRFN1-201ENST00000248668 SFTA2Q6UW10 78 aa11.83□□□□□ -0.52
LRFN1-201ENST00000248668 MRAP2Q96G30 205 aa11.83□□□□□ -0.52
LRFN1-201ENST00000248668 FCER1GP30273 86 aa11.83□□□□□ -0.52
LRFN1-201ENST00000248668 RPL39LQ96EH5 51 aaKnown RBP11.83□□□□□ -0.52
LRFN1-201ENST00000248668 MUC4Q99102 2169 aa11.83□□□□□ -0.52
LRFN1-201ENST00000248668 NRACQ8N912 160 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 NXT2Q9NPJ8 142 aaKnown RBP11.82□□□□□ -0.52
LRFN1-201ENST00000248668 J3QLI3 93 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 BOD1L2Q8IYS8 172 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 JPT2Q9H910 190 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 ZNF702PQ9H963 129 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 LENEPQ9Y5L5 61 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 ODF1Q14990 250 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 OR5A1Q8NGJ0 315 aa11.82□□□□□ -0.52
LRFN1-201ENST00000248668 SPINK8P0C7L1 97 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 ITPR2Q14571 2701 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 H3BMG7 143 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 HOXD3P31249 432 aaPredicted RBP11.81□□□□□ -0.52
LRFN1-201ENST00000248668 ID1P41134 155 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 Q6YL49 198 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 ZNF479Q96JC4 524 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 FOXC2Q99958 501 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 C20orf78Q9BR46 151 aa11.81□□□□□ -0.52
LRFN1-201ENST00000248668 RNASE3P12724 160 aaKnown RBP11.8□□□□□ -0.52
LRFN1-201ENST00000248668 Q8N8P6 123 aa11.8□□□□□ -0.52
LRFN1-201ENST00000248668 SPAG8Q99932 426 aaPredicted RBP11.8□□□□□ -0.52
LRFN1-201ENST00000248668 NHP2Q9NX24 153 aaKnown RBP11.8□□□□□ -0.52
LRFN1-201ENST00000248668 SMIM17P0DL12 118 aa11.8□□□□□ -0.52
LRFN1-201ENST00000248668 LGALS9BQ3B8N2 356 aa11.8□□□□□ -0.52
LRFN1-201ENST00000248668 LGALS9CQ6DKI2 356 aa11.8□□□□□ -0.52
LRFN1-201ENST00000248668 K7EMT4 169 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 CD7P09564 240 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 SLURP1P55000 103 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 IGLV2-18A0A075B6J9 118 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 SCGB1A1P11684 91 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 FXYD2P54710 66 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 FAM159AQ6UWV7 190 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 FAM19A4Q96LR4 140 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 SPINK13Q1W4C9 94 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 C11orf44Q8N8P7 122 aa11.79□□□□□ -0.52
LRFN1-201ENST00000248668 A0A087WWL8 130 aa11.78□□□□□ -0.52
LRFN1-201ENST00000248668 A0A1B0GWB2 263 aa11.78□□□□□ -0.52
LRFN1-201ENST00000248668 ANAPC13Q9BS18 74 aa11.78□□□□□ -0.52
LRFN1-201ENST00000248668 SMIM13P0DJ93 91 aa11.78□□□□□ -0.52
LRFN1-201ENST00000248668 HTN1P15515 57 aa11.78□□□□□ -0.52
LRFN1-201ENST00000248668 LGALS1P09382 135 aaKnown RBP11.78□□□□□ -0.52
LRFN1-201ENST00000248668 LAGE3Q14657 143 aa11.77□□□□□ -0.53
LRFN1-201ENST00000248668 WFDC11Q8NEX6 87 aa11.77□□□□□ -0.53
LRFN1-201ENST00000248668 RASL10AQ92737 203 aa11.77□□□□□ -0.53
LRFN1-201ENST00000248668 AKAP9Q99996 3911 aa11.77□□□□□ -0.53
LRFN1-201ENST00000248668 NIPBLQ6KC79 2804 aaeCLIP11.77□□□□□ -0.53
LRFN1-201ENST00000248668 IGHV4-4A0A075B6R2 117 aa11.77□□□□□ -0.53
LRFN1-201ENST00000248668 FSHBP01225 129 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 SNRPD3P62318 126 aaKnown RBP11.76□□□□□ -0.53
LRFN1-201ENST00000248668 FAM74A4Q5TZK3 123 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 DPF1Q92782 380 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 CITED1Q99966 193 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 DPH3P1Q9H4G8 78 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 SYT8Q8NBV8 401 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 TMEM160Q9NX00 188 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 SIVA1O15304 175 aa11.76□□□□□ -0.53
LRFN1-201ENST00000248668 KLLNB2CW77 178 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 MT-ATP8P03928 68 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 TCTEX1D4Q5JR98 221 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 SMIM2Q9BVW6 85 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 MRPL16Q9NX20 251 aaKnown RBP11.75□□□□□ -0.53
LRFN1-201ENST00000248668 GCN1Q92616 2671 aaKnown RBP11.75□□□□□ -0.53
LRFN1-201ENST00000248668 F5H697 171 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 MDFICQ9P1T7 246 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 ZNF580Q9UK33 172 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 SUMO2P61956 95 aaKnown RBP11.75□□□□□ -0.53
LRFN1-201ENST00000248668 GTSCR1Q86UQ5 136 aa11.75□□□□□ -0.53
LRFN1-201ENST00000248668 SPANXB1Q9NS25 103 aaPredicted RBP11.75□□□□□ -0.53
LRFN1-201ENST00000248668 IGKV2D-26A0A0A0MRZ7 120 aa11.74□□□□□ -0.53
LRFN1-201ENST00000248668 ELANEP08246 267 aa11.74□□□□□ -0.53
LRFN1-201ENST00000248668 MYOZ3Q8TDC0 251 aa11.74□□□□□ -0.53
LRFN1-201ENST00000248668 KNCNA6PVL3 124 aa11.74□□□□□ -0.53
LRFN1-201ENST00000248668 A0A0J9YX75 114 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 K7EQG2 157 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 PRM2P04554 102 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 MRPL35Q9NZE8 188 aaKnown RBP11.73□□□□□ -0.53
LRFN1-201ENST00000248668 KRTAP1-3Q8IUG1 177 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 C3orf56Q8N813 242 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 UBE2E2Q96LR5 201 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 OR11H1Q8NG94 326 aa11.73□□□□□ -0.53
LRFN1-201ENST00000248668 APRG1Q8IVJ8 170 aa11.72□□□□□ -0.53
LRFN1-201ENST00000248668 TRBV7-9A0A0J9YWB2 115 aa11.72□□□□□ -0.53
LRFN1-201ENST00000248668 LINC01546A6NGU7 62 aa11.72□□□□□ -0.53
LRFN1-201ENST00000248668 PGPEP1Q9NXJ5 209 aa11.72□□□□□ -0.53
LRFN1-201ENST00000248668 A0A1W2PRX2 142 aa11.71□□□□□ -0.53
LRFN1-201ENST00000248668 IGKCP01834 107 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms