RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 EMP1P54849 157 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 APRG1Q8IVJ8 170 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 KIR2DL5AQ8N109 375 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 TTTY13Q9BZ97 58 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 DKK2Q9UBU2 259 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 KPRPQ5T749 579 aaPredicted RBP6.45□□□□□ -1.38
VPS4B-201ENST00000238497 IFI27L1Q96BM0 104 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 TMEM208Q9BTX3 173 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 ZNF256Q9Y2P7 627 aaPredicted RBP6.45□□□□□ -1.38
VPS4B-201ENST00000238497 LAMTOR2Q9Y2Q5 125 aa6.45□□□□□ -1.38
VPS4B-201ENST00000238497 A0A1B0GW15 77 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 HBDP02042 147 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 FCER1GP30273 86 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 RNF151Q2KHN1 245 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 IGLC6P0CF74 106 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 MPV17L2Q567V2 206 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 RNF152Q8N8N0 203 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 OR2K2Q8NGT1 345 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 C20orf144Q9BQM9 153 aa6.44□□□□□ -1.38
VPS4B-201ENST00000238497 NAA38Q9BRA0 125 aaKnown RBP6.44□□□□□ -1.38
VPS4B-201ENST00000238497 STAB2Q8WWQ8 2551 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 TSPOP30536 169 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 ZNF56Q15929 161 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 C9orf47Q6ZRZ4 202 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 ZFAND2AQ8N6M9 145 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 TRBV6-1A0A0K0K1D8 114 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 NPSP0C0P6 89 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 SLC25A34Q6PIV7 304 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 U3KQE9 123 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 LINC01559Q495D7 138 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 MYOZ3Q8TDC0 251 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 RNF185Q96GF1 192 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 MDFICQ9P1T7 246 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 NBEAL2Q6ZNJ1 2754 aa6.43□□□□□ -1.38
VPS4B-201ENST00000238497 TRAV8-6A0A0B4J262 113 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 DNLZQ5SXM8 178 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 CTRLP40313 264 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 NUTF2P61970 127 aaKnown RBP6.42□□□□□ -1.38
VPS4B-201ENST00000238497 GTSCR1Q86UQ5 136 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 ZNF580Q9UK33 172 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 RBAKDNA6NC62 111 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 FHL3Q13643 280 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 C19orf54Q5BKX5 351 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 CFAP161Q6P656 301 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 RAB37Q96AX2 223 aa6.42□□□□□ -1.38
VPS4B-201ENST00000238497 TENM3Q9P273 2699 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 K7EMI3 77 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 VAMP3Q15836 100 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 ZC2HC1BQ5TFG8 222 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 PET117Q6UWS5 81 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 TMEM61Q8N0U2 210 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 XCL2Q9UBD3 114 aa6.41□□□□□ -1.38
VPS4B-201ENST00000238497 H3BUA1 57 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 EGFEM1PQ0D2K5 195 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 COL5A1-AS1Q5SY13 56 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 ZNF493Q6ZR52 646 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 C2orf88Q9BSF0 95 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 INSL3P51460 131 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 CRIP2P52943 208 aaPredicted RBP6.4□□□□□ -1.38
VPS4B-201ENST00000238497 ZNF575Q86XF7 245 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 CSTL1Q9H114 145 aa6.4□□□□□ -1.38
VPS4B-201ENST00000238497 A0A096LNJ9 63 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 IGHV3-16A0A0C4DH30 117 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 CIDEAO60543 219 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 PPBPP02775 128 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 ZNF876PQ49A33 203 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 PCP2Q8IVA1 136 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 Q8N1Y9 231 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 DCANP1Q8TF63 244 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 CLUHP3Q96NS8 147 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 SCGB3A1Q96QR1 104 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 LINC01587Q99440 93 aa6.4□□□□□ -1.39
VPS4B-201ENST00000238497 AP1S3Q96PC3 154 aa6.39□□□□□ -1.39
VPS4B-201ENST00000238497 NXT2Q9NPJ8 142 aaKnown RBP6.39□□□□□ -1.39
VPS4B-201ENST00000238497 LAGE3Q14657 143 aa6.39□□□□□ -1.39
VPS4B-201ENST00000238497 DPH3P1Q9H4G8 78 aa6.39□□□□□ -1.39
VPS4B-201ENST00000238497 OR9G4Q8NGQ1 327 aa6.38□□□□□ -1.39
VPS4B-201ENST00000238497 SOCS3O14543 225 aa6.38□□□□□ -1.39
VPS4B-201ENST00000238497 CDKN1BP46527 198 aa6.38□□□□□ -1.39
VPS4B-201ENST00000238497 SUMO2P61956 95 aaKnown RBP6.38□□□□□ -1.39
VPS4B-201ENST00000238497 MUC4Q99102 2169 aa6.38□□□□□ -1.39
VPS4B-201ENST00000238497 IGHV3-53P01767 116 aa6.38□□□□□ -1.39
VPS4B-201ENST00000238497 RNASE3P12724 160 aaKnown RBP6.38□□□□□ -1.39
VPS4B-201ENST00000238497 CD300EQ496F6 205 aaPredicted RBP6.38□□□□□ -1.39
VPS4B-201ENST00000238497 GATD1Q8NB37 220 aa6.38□□□□□ -1.39
VPS4B-201ENST00000238497 MRPL53Q96EL3 112 aaKnown RBP6.38□□□□□ -1.39
VPS4B-201ENST00000238497 MRPL35Q9NZE8 188 aaKnown RBP6.38□□□□□ -1.39
VPS4B-201ENST00000238497 PEMTQ9UBM1 199 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 CHTOPQ9Y3Y2 248 aaKnown RBP6.37□□□□□ -1.39
VPS4B-201ENST00000238497 IGHV3-64A0A075B6Q5 118 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 A0A0J9YX75 114 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.37□□□□□ -1.39
VPS4B-201ENST00000238497 P0DMU3 169 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 FAM231AP0DMU4 169 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 FAM231CP0DMU5 169 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 RPL35AP18077 110 aaKnown RBP6.37□□□□□ -1.39
VPS4B-201ENST00000238497 GCSHP23434 173 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 PTTG1IPP53801 180 aa6.37□□□□□ -1.39
VPS4B-201ENST00000238497 RPL39P62891 51 aaKnown RBP6.37□□□□□ -1.39
VPS4B-201ENST00000238497 RNASE8Q8TDE3 154 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms