RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SCRT2Q9NQ03 307 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 MSRB1Q9NZV6 116 aa6.97□□□□□ -1.29
SCN1A-222ENST00000642141 IGKV3D-20A0A0C4DH25 116 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 CTXND1A0A1B0GTU2 59 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 G3V3Q6 166 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 EREGO14944 169 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 RS1O15537 224 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 RNASE3P12724 160 aaKnown RBP6.96□□□□□ -1.3
SCN1A-222ENST00000642141 ERVFC1-1P60608 527 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 SAPCD1Q5SSQ6 148 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 AKR1C8PQ5T2L2 129 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 C9orf85Q96MD7 179 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 ARL2-SNX15V9GYD0 113 aa6.96□□□□□ -1.3
SCN1A-222ENST00000642141 APOBP04114 4563 aaKnown RBP6.95□□□□□ -1.3
SCN1A-222ENST00000642141 A0A087WTM6 91 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 A0A1B0GV50 99 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 A0A1W2PRE2 83 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 FAM74A7A6NL05 159 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 M0R036 132 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 PEX7O00628 323 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 IGHV3-30P01768 117 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 IGHV3-33P01772 117 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 IGHV3-30-3P0DP02 117 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 IGHV3-30-5P0DP03 117 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 S100A4P26447 101 aaKnown RBP6.95□□□□□ -1.3
SCN1A-222ENST00000642141 FHITP49789 147 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 LGALSLQ3ZCW2 172 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-222ENST00000642141 OR10J3Q5JRS4 329 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 NFE4Q86UQ8 179 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 PRADC1Q9BSG0 188 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 JPT2Q9H910 190 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 Q9HAA7 133 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 Q9UF83 564 aa6.95□□□□□ -1.3
SCN1A-222ENST00000642141 DNAH5Q8TE73 4624 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 TMSB15BA0A087X1C1 80 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 IGHV3-38A0A0C4DH36 116 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 GRIFINA4D1Z8 144 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 MAP1LC3B2A6NCE7 125 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 FABP5P3A8MUU1 101 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 B4DEV8 164 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 CRIP1P50238 77 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 IFITM2Q01629 132 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 CST9LP1Q5W188 147 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 ZC2HC1AQ96GY0 325 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 SAMD10Q9BYL1 202 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 MAP1LC3BQ9GZQ8 125 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 CYTL1Q9NRR1 136 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 PGPEP1Q9NXJ5 209 aa6.94□□□□□ -1.3
SCN1A-222ENST00000642141 TRAV8-6A0A0B4J262 113 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 GAGE12JA6NER3 117 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 H3BVH4 76 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 ASIPP42127 132 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 KRTAP10-1P60331 282 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 GAGE1Q13065 139 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 GAGE4Q13068 117 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 GAGE5Q13069 117 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 RHOHQ15669 191 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 GAGE13Q4V321 117 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 SH2D6Q7Z4S9 175 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 Q86TA4 180 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 Q8N1X5 172 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 Q8N3U1 123 aa6.93□□□□□ -1.3
SCN1A-222ENST00000642141 TRBV6-4A0A1B0GX49 114 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 KRBOX1C9JBD0 128 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 PSCAO43653 123 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 SH2D1AO60880 128 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 HAMPP81172 84 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 C14orf178Q8N769 122 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-222ENST00000642141 ATP6V0E2Q8NHE4 81 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 PARLQ9H300 379 aa6.92□□□□□ -1.3
SCN1A-222ENST00000642141 ARMS2P0C7Q2 107 aa6.91□□□□□ -1.3
SCN1A-222ENST00000642141 MGST1P10620 155 aaKnown RBP6.91□□□□□ -1.3
SCN1A-222ENST00000642141 FAM74A4Q5TZK3 123 aa6.91□□□□□ -1.3
SCN1A-222ENST00000642141 FAM213BQ8TBF2 198 aa6.91□□□□□ -1.3
SCN1A-222ENST00000642141 HIST1H2BAQ96A08 127 aa6.91□□□□□ -1.3
SCN1A-222ENST00000642141 GTSF1LQ9H1H1 148 aa6.91□□□□□ -1.3
SCN1A-222ENST00000642141 A0A087WWL8 130 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 A8MWV9 139 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 IBA57-AS1B1ANH7 110 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 M0R381 172 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 PAGE4O60829 102 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 XGP55808 180 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 TIRAPP58753 221 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 UBE2G1P62253 170 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 LINC01556Q5JQF7 62 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 FAM162BQ5T6X4 162 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 LELP1Q5T871 98 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 C10orf126Q8N4M7 172 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 OR11H4Q8NGC9 324 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 STOML3Q8TAV4 291 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 SFT2D1Q8WV19 159 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 PTH2Q96A98 100 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 NKX6-2Q9C056 277 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-222ENST00000642141 IL36BQ9NZH7 164 aa6.9□□□□□ -1.3
SCN1A-222ENST00000642141 K7EP13 123 aa6.89□□□□□ -1.31
SCN1A-222ENST00000642141 CIDEAO60543 219 aa6.89□□□□□ -1.31
SCN1A-222ENST00000642141 SMR3BP02814 79 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-222ENST00000642141 SSTP61278 116 aa6.89□□□□□ -1.31
SCN1A-222ENST00000642141 KCNRGQ8N5I3 272 aa6.89□□□□□ -1.31
SCN1A-222ENST00000642141 FMC1Q96HJ9 113 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms