RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CTRLP40313 264 aa7.06□□□□□ -1.28
CLN3-261ENST00000637686 RASL11AQ6T310 242 aa7.06□□□□□ -1.28
CLN3-261ENST00000637686 ATP5L2Q7Z4Y8 100 aa7.06□□□□□ -1.28
CLN3-261ENST00000637686 SSBP4Q9BWG4 385 aaPredicted RBP7.06□□□□□ -1.28
CLN3-261ENST00000637686 CNFNQ9BYD5 112 aa7.06□□□□□ -1.28
CLN3-261ENST00000637686 C11orf21Q9P2W6 132 aa7.06□□□□□ -1.28
CLN3-261ENST00000637686 NAT8BQ9UHF3 227 aa7.06□□□□□ -1.28
CLN3-261ENST00000637686 SNAI2O43623 268 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 SPART-AS1P0CW21 52 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 HTN1P15515 57 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 AZU1P20160 251 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 C12orf74Q32Q52 190 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 COX19Q49B96 90 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 PIK3CD-AS1Q5SR53 167 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 ZNF493Q6ZR52 646 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 ZNF575Q86XF7 245 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 PTH2Q96A98 100 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 YPEL4Q96NS1 127 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 NDUFAF3Q9BU61 184 aa7.05□□□□□ -1.28
CLN3-261ENST00000637686 IGHV4-4A0A075B6R2 117 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 A0A1B0GW15 77 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 HIGD1CA8MV81 97 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 ASIPP42127 132 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 FAM222AQ5U5X8 452 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 Q6ZTC4 211 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 FER1L6-AS1Q8NA97 138 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 NUP35Q8NFH5 326 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 GTSF1Q8WW33 167 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 SCRT2Q9NQ03 307 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 DKK2Q9UBU2 259 aa7.04□□□□□ -1.28
CLN3-261ENST00000637686 KLK5Q9Y337 293 aaPredicted RBP7.04□□□□□ -1.28
CLN3-261ENST00000637686 KMT2CQ8NEZ4 4911 aaKnown RBP7.04□□□□□ -1.28
CLN3-261ENST00000637686 PLAC8L1A1L4L8 177 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 TYMSP04818 313 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 S100A8P05109 93 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 CACNG7P62955 275 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 ELOBQ15370 118 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 TMEM263Q8WUH6 116 aaKnown RBP7.03□□□□□ -1.28
CLN3-261ENST00000637686 C9orf85Q96MD7 179 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 MUC4Q99102 2169 aa7.03□□□□□ -1.28
CLN3-261ENST00000637686 DYNC2H1Q8NCM8 4307 aaKnown RBP7.03□□□□□ -1.28
CLN3-261ENST00000637686 TENM2Q9NT68 2774 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 TRAV10A0A0B4J240 114 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 IGHV3-16A0A0C4DH30 117 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 A0A1B0GUT8 65 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 NXPH4O95158 308 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 RNASE3P12724 160 aaKnown RBP7.02□□□□□ -1.29
CLN3-261ENST00000637686 S100A4P26447 101 aaKnown RBP7.02□□□□□ -1.29
CLN3-261ENST00000637686 ZNF415Q09FC8 603 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 MUC21Q5SSG8 566 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 CBLN2Q8IUK8 224 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 GATD1Q8NB37 220 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 BORCS7Q96B45 105 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 C16orf74Q96GX8 76 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 SPXQ9BT56 116 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 NAGKQ9UJ70 344 aa7.02□□□□□ -1.29
CLN3-261ENST00000637686 DEFB131BA0A096LNP1 70 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 LCE6AA0A183 80 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 TEX48A0A1B0GUV7 120 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 A0A1B0GXF2 115 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 CBY3A6NI87 242 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 ARMS2P0C7Q2 107 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 TCL1AP56279 114 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 RIGQ13278 110 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 TMEM88Q6PEY1 159 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 Q6ZQT7 251 aa7.01□□□□□ -1.29
CLN3-261ENST00000637686 RNASE8Q8TDE3 154 aaKnown RBP7.01□□□□□ -1.29
CLN3-261ENST00000637686 PLECQ15149 4684 aaKnown RBP7.01□□□□□ -1.29
CLN3-261ENST00000637686 TMSB15BA0A087X1C1 80 aa7□□□□□ -1.29
CLN3-261ENST00000637686 LYRM9A8MSI8 78 aa7□□□□□ -1.29
CLN3-261ENST00000637686 IGLL5B9A064 214 aa7□□□□□ -1.29
CLN3-261ENST00000637686 SCO1O75880 301 aa7□□□□□ -1.29
CLN3-261ENST00000637686 MT-ND6P03923 174 aa7□□□□□ -1.29
CLN3-261ENST00000637686 GZMBP10144 247 aa7□□□□□ -1.29
CLN3-261ENST00000637686 FAM3BP58499 235 aaPredicted RBP7□□□□□ -1.29
CLN3-261ENST00000637686 DAD1P61803 113 aa7□□□□□ -1.29
CLN3-261ENST00000637686 DAZ2Q13117 558 aaKnown RBP7□□□□□ -1.29
CLN3-261ENST00000637686 LGALS9BQ3B8N2 356 aa7□□□□□ -1.29
CLN3-261ENST00000637686 LYZL1Q6UWQ5 148 aa7□□□□□ -1.29
CLN3-261ENST00000637686 ZFP82Q8N141 532 aa7□□□□□ -1.29
CLN3-261ENST00000637686 C11orf72Q8NBR9 251 aa7□□□□□ -1.29
CLN3-261ENST00000637686 NOP10Q9NPE3 64 aaKnown RBP7□□□□□ -1.29
CLN3-261ENST00000637686 PHLDA3Q9Y5J5 127 aa7□□□□□ -1.29
CLN3-261ENST00000637686 TIMM8BQ9Y5J9 83 aaPredicted RBP7□□□□□ -1.29
CLN3-261ENST00000637686 URGCP-MRPS24S4R325 110 aa7□□□□□ -1.29
CLN3-261ENST00000637686 SACSQ9NZJ4 4579 aa7□□□□□ -1.29
CLN3-261ENST00000637686 GRIFINA4D1Z8 144 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 COLCA2A8K830 154 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 H3BVH4 76 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 M0R2P5 195 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 GNRH2O43555 120 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 DEFB130BP0DP73 79 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 DEFB130AP0DP74 79 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 HBBP68871 147 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 SYT8Q8NBV8 401 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 FAM210BQ96KR6 192 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 PGLYRP4Q96LB8 373 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 GNB1LQ9BYB4 327 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 LYSTQ99698 3801 aa6.99□□□□□ -1.29
CLN3-261ENST00000637686 HLA-DQA1P01909 254 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms