RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 IGKV3-20P01619 116 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 CD7P09564 240 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 RNASE3P12724 160 aaKnown RBP7.77□□□□□ -1.17
CLN3-248ENST00000636355 NDUFA6P56556 154 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 SNRPEP62304 92 aaKnown RBP7.77□□□□□ -1.17
CLN3-248ENST00000636355 KIR3DS1Q14943 382 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 MUC21Q5SSG8 566 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 SPANXN1Q5VSR9 72 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 C3orf56Q8N813 242 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 SYT8Q8NBV8 401 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 PTH2Q96A98 100 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 ALKBH7Q9BT30 221 aaPredicted RBP7.77□□□□□ -1.17
CLN3-248ENST00000636355 ZMAT5Q9UDW3 170 aaKnown RBP7.77□□□□□ -1.17
CLN3-248ENST00000636355 U3KQK5 164 aa7.77□□□□□ -1.17
CLN3-248ENST00000636355 TRAV12-2A0A075B6T6 113 aa7.76□□□□□ -1.17
CLN3-248ENST00000636355 ZNF415Q09FC8 603 aa7.76□□□□□ -1.17
CLN3-248ENST00000636355 C12orf54Q6X4T0 127 aa7.76□□□□□ -1.17
CLN3-248ENST00000636355 ORMDL3Q8N138 153 aa7.76□□□□□ -1.17
CLN3-248ENST00000636355 HIST3H2BBQ8N257 126 aa7.76□□□□□ -1.17
CLN3-248ENST00000636355 C18orf32Q8TCD1 76 aa7.76□□□□□ -1.17
CLN3-248ENST00000636355 S100A2P29034 98 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 ZNF124Q15973 351 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 Q8N1Y9 231 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 MRAP2Q96G30 205 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 DPH3P1Q9H4G8 78 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 GSN-AS1Q9NRJ2 163 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 VWFP04275 2813 aa7.75□□□□□ -1.17
CLN3-248ENST00000636355 PPP1R17O96001 155 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 RBMY1A1P0DJD3 496 aaKnown RBP7.74□□□□□ -1.17
CLN3-248ENST00000636355 RBMY1CP0DJD4 496 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 RBMY1FQ15415 496 aaKnown RBP7.74□□□□□ -1.17
CLN3-248ENST00000636355 Q6ZQT7 251 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 BAGE3Q86Y29 109 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 DEFB125Q8N687 156 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 TMEM18Q96B42 140 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 CHCHD1Q96BP2 118 aaKnown RBP7.74□□□□□ -1.17
CLN3-248ENST00000636355 SPXQ9BT56 116 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 GOLT1BQ9Y3E0 138 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 MUC4Q99102 2169 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 NOTCH3Q9UM47 2321 aa7.74□□□□□ -1.17
CLN3-248ENST00000636355 KIR2DL5BA0A0G2JN68 375 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 KIR2DL5BA0A0G2JPC4 375 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 CBY3A6NI87 242 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 M0R381 172 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 KIAA1644Q3SXP7 199 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 MRPL51Q4U2R6 128 aaKnown RBP7.73□□□□□ -1.17
CLN3-248ENST00000636355 PRR31Q5SQ13 230 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 AMN1Q8IY45 258 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 KIR2DL5AQ8N109 375 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 POM121L12Q8N7R1 296 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 KIR2DL5BQ8NHK3 375 aa7.73□□□□□ -1.17
CLN3-248ENST00000636355 STAB1Q9NY15 2570 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 D6R8Y8 96 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 GNRH2O43555 120 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 SERF1AO75920 110 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 SMIM6P0DI80 62 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 RAB4AP20338 218 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 PMCHP20382 165 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 CKS2P33552 79 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 IL17DQ8TAD2 202 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 TMEM263Q8WUH6 116 aaKnown RBP7.72□□□□□ -1.17
CLN3-248ENST00000636355 RNF185Q96GF1 192 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 PRELID3AQ96N28 172 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 MSRB1Q9NZV6 116 aa7.72□□□□□ -1.17
CLN3-248ENST00000636355 M0R2P5 195 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 SMIM17P0DL12 118 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 EVI2AP22794 236 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 LINC00310P59036 64 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 EGFEM1PQ0D2K5 195 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 HIST1H2BLQ99880 126 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 TMEM208Q9BTX3 173 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 EDA2RQ9HAV5 297 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 XCL2Q9UBD3 114 aa7.71□□□□□ -1.18
CLN3-248ENST00000636355 MUC21A0A0G2JKD1 596 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 MUC21A0A140T8X8 626 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 IFITM10A6NMD0 228 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 PRSS47A8MTI9 375 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 A8MWV9 139 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 K7EMI3 77 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 RHODO00212 210 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 APOC4P55056 127 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 FXYD7P58549 80 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 ZNF705AQ6ZN79 300 aaPredicted RBP7.7□□□□□ -1.18
CLN3-248ENST00000636355 C1orf158Q8N1D5 194 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 C11orf72Q8NBR9 251 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 RNASE8Q8TDE3 154 aaKnown RBP7.7□□□□□ -1.18
CLN3-248ENST00000636355 C16orf74Q96GX8 76 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 LINC01587Q99440 93 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 MAP1LC3AQ9H492 121 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 NXT2Q9NPJ8 142 aaKnown RBP7.7□□□□□ -1.18
CLN3-248ENST00000636355 MDFICQ9P1T7 246 aa7.7□□□□□ -1.18
CLN3-248ENST00000636355 COL6A5A8TX70 2615 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 LINC01546A6NGU7 62 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 HSBP1O75506 76 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 GIG44P09565 113 aaPredicted RBP7.69□□□□□ -1.18
CLN3-248ENST00000636355 FABP4P15090 132 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 IGLL1P15814 213 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 RPL32P62910 135 aaKnown RBP7.69□□□□□ -1.18
CLN3-248ENST00000636355 LGALS9BQ3B8N2 356 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 CSNK1G2-AS1Q8NCQ2 148 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms