RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ZNF506Q5JVG8 444 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 Q6ZR54 194 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 HSPG2P98160 4391 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 A0A087WWL8 130 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 TRAV21A0A0B4J279 112 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 ORM1P02763 201 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 CRYBA4P53673 196 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 TNP2Q05952 138 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 TDRG1Q3Y452 100 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 HHLA3Q9XRX5 114 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 TPT1P13693 172 aaKnown RBP3.91□□□□□ -1.78
CPNE3-208ENST00000614678 WFDC10BQ8IUB3 73 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 RASL10AQ92737 203 aa3.91□□□□□ -1.78
CPNE3-208ENST00000614678 K7EQD1 137 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 IGLV2-8P01709 118 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 NMBP08949 121 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 ZFP69Q49AA0 526 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 IBA57Q5T440 356 aaKnown RBP3.9□□□□□ -1.78
CPNE3-208ENST00000614678 CFAP126Q5VTH2 177 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 SLC25A29Q8N8R3 303 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 RBFOX3A6NFN3 312 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 PAX4O43316 350 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 LTAP01374 205 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 GYPEP15421 78 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 RPL35P42766 123 aaKnown RBP3.9□□□□□ -1.78
CPNE3-208ENST00000614678 ZNF415Q09FC8 603 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 TEX261Q6UWH6 196 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 C14orf178Q8N769 122 aaPredicted RBP3.9□□□□□ -1.78
CPNE3-208ENST00000614678 LINC00467Q9BRT7 94 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 Q9H8V8 135 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 MSRB1Q9NZV6 116 aa3.9□□□□□ -1.78
CPNE3-208ENST00000614678 FAT1Q14517 4588 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 TRGV4A0A0C4DH28 118 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 ARMS2P0C7Q2 107 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 SULT1A2P50226 295 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 SRSF3P84103 164 aaKnown RBP3.9□□□□□ -1.79
CPNE3-208ENST00000614678 C9orf85Q96MD7 179 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 A0A1B0GVY2 172 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 B4DEV8 164 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 KRBOX1C9JBD0 128 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 M0R381 172 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 FAM74A4Q5TZK3 123 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 OR10AG1Q8NH19 301 aa3.9□□□□□ -1.79
CPNE3-208ENST00000614678 ATRAIDQ6UW56 229 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 LYPD5Q6UWN5 251 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 MLST8Q9BVC4 326 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 SDF2L1Q9HCN8 221 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 LENEPQ9Y5L5 61 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 C9JQL5 133 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 M0R2P5 195 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 S100A6P06703 90 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 AKR1C3P42330 323 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 UBE2G1P62253 170 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 ZNF674Q2M3X9 581 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 OR4C5Q8NGB2 326 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 TRBV7-9A0A0J9YWB2 115 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 K7EN84 100 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 CEBPGP53567 150 aa3.89□□□□□ -1.79
CPNE3-208ENST00000614678 NBDYA0A0U1RRE5 68 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 TEX48A0A1B0GUV7 120 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 PCP4L1A6NKN8 68 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 F8W036 122 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 CENPWQ5EE01 88 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 BAGE2Q86Y30 109 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 HIST1H2BAQ96A08 127 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 PRSS29PA6NIE9 313 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 FABP5P3A8MUU1 101 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 UMAD1C9J7I0 102 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 DNAH10OSP0CZ25 163 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 FOXA3P55318 350 aaPredicted RBP3.88□□□□□ -1.79
CPNE3-208ENST00000614678 LGALS9BQ3B8N2 356 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 NDFIP1Q9BT67 221 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 TPPP3Q9BW30 176 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 RNASE7Q9H1E1 156 aaKnown RBP3.88□□□□□ -1.79
CPNE3-208ENST00000614678 PRO0255Q9UI72 69 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 TRGV11A0A075B6L2 103 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 MGST1P10620 155 aaKnown RBP3.88□□□□□ -1.79
CPNE3-208ENST00000614678 KRTAP10-2P60368 255 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 CLLU1Q5K131 121 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 UFSP1Q6NVU6 142 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 KRTAP4-5Q9BYR2 181 aa3.88□□□□□ -1.79
CPNE3-208ENST00000614678 GAGE12JA6NER3 117 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 K7EQM0 130 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 S100A4P26447 101 aaKnown RBP3.87□□□□□ -1.79
CPNE3-208ENST00000614678 GAGE1Q13065 139 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 GAGE4Q13068 117 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 GAGE5Q13069 117 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 GAGE13Q4V321 117 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 C15orf53Q8NAA6 179 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 FMC1Q96HJ9 113 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 C18orf15Q96N68 181 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 C12orf57Q99622 126 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 IGHV3-38A0A0C4DH36 116 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 NXPH4O95158 308 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 GATA1P15976 413 aaPredicted RBP3.87□□□□□ -1.79
CPNE3-208ENST00000614678 CCL18P55774 89 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 TCTAP57738 103 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 FAM162BQ5T6X4 162 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 TRAV4A0A0B4J268 109 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 RS1O15537 224 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms