RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 HIST1H2BBP33778 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BDP58876 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 RAB5BP61020 215 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BCP62807 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST2H2BEQ16778 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.38□□□□□ -0.75
USP39-220ENST00000613444 MORN3Q6PF18 240 aaPredicted RBP10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BHQ93079 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 C9orf85Q96MD7 179 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BNQ99877 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 HIST1H2BMQ99879 126 aa10.38□□□□□ -0.75
USP39-220ENST00000613444 TWIST1Q15672 202 aa10.37□□□□□ -0.75
USP39-220ENST00000613444 TIMM8BQ9Y5J9 83 aaPredicted RBP10.37□□□□□ -0.75
USP39-220ENST00000613444 NXPH4O95158 308 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 CACNG7P62955 275 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 LINC01587Q99440 93 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 CBY3A6NI87 242 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 APCSP02743 223 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 S100A8P05109 93 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 KIAA1644Q3SXP7 199 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 TMEM256Q8N2U0 113 aa10.36□□□□□ -0.75
USP39-220ENST00000613444 TRGV11A0A075B6L2 103 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 G3V4G9 280 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 CSTL1Q9H114 145 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 PHLDA3Q9Y5J5 127 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 HTN1P15515 57 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 SPANXN1Q5VSR9 72 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 DMRTA1Q5VZB9 504 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 C11orf72Q8NBR9 251 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 C1QTNF4Q9BXJ3 329 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 TMEM191AQ9H0A3 160 aa10.35□□□□□ -0.75
USP39-220ENST00000613444 NOTCH1P46531 2555 aa10.34□□□□□ -0.75
USP39-220ENST00000613444 NBEAL1Q6ZS30 2694 aa10.34□□□□□ -0.75
USP39-220ENST00000613444 SAMD5Q5TGI4 173 aa10.34□□□□□ -0.75
USP39-220ENST00000613444 ZNF705AQ6ZN79 300 aaPredicted RBP10.34□□□□□ -0.75
USP39-220ENST00000613444 M0R381 172 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 AZU1P20160 251 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 FAM104BQ5XKR9 115 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 NBEAL2Q6ZNJ1 2754 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 LOC102724200A0A096LPH7 203 aaPredicted RBP10.33□□□□□ -0.76
USP39-220ENST00000613444 EVI2AP22794 236 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 AMN1Q8IY45 258 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 RNF185Q96GF1 192 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 TMEM208Q9BTX3 173 aa10.33□□□□□ -0.76
USP39-220ENST00000613444 IGHV3OR16-12A0A075B7B8 117 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 IGHV4-30-4P0DP06 118 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 NACAE9PAV3 2078 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 KIR2DL5BA0A0G2JN68 375 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 KIR2DL5BA0A0G2JPC4 375 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 KIR2DL5AQ8N109 375 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 KIR2DL5BQ8NHK3 375 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 RNASE8Q8TDE3 154 aaKnown RBP10.32□□□□□ -0.76
USP39-220ENST00000613444 GOLT1BQ9Y3E0 138 aa10.32□□□□□ -0.76
USP39-220ENST00000613444 MGAM2Q2M2H8 2515 aa10.31□□□□□ -0.76
USP39-220ENST00000613444 SRIP30626 198 aa10.31□□□□□ -0.76
USP39-220ENST00000613444 IL17DQ8TAD2 202 aa10.31□□□□□ -0.76
USP39-220ENST00000613444 ALKBH7Q9BT30 221 aaPredicted RBP10.31□□□□□ -0.76
USP39-220ENST00000613444 GSN-AS1Q9NRJ2 163 aa10.31□□□□□ -0.76
USP39-220ENST00000613444 RAB4AP20338 218 aa10.31□□□□□ -0.76
USP39-220ENST00000613444 MRPL51Q4U2R6 128 aaKnown RBP10.31□□□□□ -0.76
USP39-220ENST00000613444 KIF25-AS1Q9Y6Z4 181 aa10.31□□□□□ -0.76
USP39-220ENST00000613444 ZNF415Q09FC8 603 aa10.3□□□□□ -0.76
USP39-220ENST00000613444 JPT2Q9H910 190 aa10.3□□□□□ -0.76
USP39-220ENST00000613444 PLAC8L1A1L4L8 177 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 C5orf52A6NGY3 159 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 NDUFA6P56556 154 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 COA6Q5JTJ3 125 aaKnown RBP10.29□□□□□ -0.76
USP39-220ENST00000613444 ZMAT5Q9UDW3 170 aaKnown RBP10.29□□□□□ -0.76
USP39-220ENST00000613444 U3KQK5 164 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 A8MZ25 164 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 LINC00315P59091 139 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 TMEM263Q8WUH6 116 aaKnown RBP10.29□□□□□ -0.76
USP39-220ENST00000613444 PTH2Q96A98 100 aa10.29□□□□□ -0.76
USP39-220ENST00000613444 APOC4P55056 127 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 SNRPEP62304 92 aaKnown RBP10.28□□□□□ -0.76
USP39-220ENST00000613444 Q0VG73 95 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 ZNF876PQ49A33 203 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 C14orf178Q8N769 122 aaPredicted RBP10.28□□□□□ -0.76
USP39-220ENST00000613444 AP1S3Q96PC3 154 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 RCHY1Q96PM5 261 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 M0R2P5 195 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 GAS8-AS1O95177 125 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 S100A6P06703 90 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 C18orf32Q8TCD1 76 aa10.28□□□□□ -0.76
USP39-220ENST00000613444 D6R8Y8 96 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 LINC00310P59036 64 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 SMIM15Q7Z3B0 74 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 POM121L12Q8N7R1 296 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 SYT8Q8NBV8 401 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 SPXQ9BT56 116 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 DPH3P1Q9H4G8 78 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 X6R8D5 127 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 DNHD1Q96M86 4753 aa10.27□□□□□ -0.77
USP39-220ENST00000613444 CRYGDP07320 174 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 RIPPLY3P57055 190 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 PIK3CD-AS1Q5SR53 167 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 SAMD10Q9BYL1 202 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 LOC105371267A0A1B0GV96 52 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 SMKR1H3BMG3 65 aa10.26□□□□□ -0.77
USP39-220ENST00000613444 OR10J3Q5JRS4 329 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms