RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RRN3P1Q2M238 152 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 Q8N976 141 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 TYMSOSQ8TAI1 123 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 MAFIPQ8WZ33 124 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 BORCS5Q969J3 196 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 ABHD14BQ96IU4 210 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 DERL3Q96Q80 235 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 SPIN2AQ99865 258 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 SPIN2BQ9BPZ2 258 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 FAM107BQ9H098 131 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 MED28Q9H204 178 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 DAZ3Q9NR90 486 aaKnown RBP2.68□□□□□ -1.98
LINC00540-201ENST00000611481 JPT1Q9UK76 154 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 OR52A1Q9UKL2 312 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 HSPB11Q9Y547 144 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 PXMP4Q9Y6I8 212 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 IGKV1-6A0A0C4DH72 117 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 FAM236DA0A1B0GTK5 79 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 OR4C45A6NMZ5 311 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 INMT-MINDY4F8WBC2 141 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 MRASO14807 208 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 YPEL1O60688 119 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 SULT1C4O75897 302 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 MT-CO2P00403 227 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 IGKV1-39P01597 117 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 APCSP02743 223 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 PPBPP02775 128 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 IGKV1D-39P04432 117 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 SEC11BP0C7V7 166 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 FAM236CP0DP71 79 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 S100GP29377 79 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 OR10J1P30954 320 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 RHOBP62745 196 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 HERVK_113P63121 156 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 SELENOWP63302 87 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 RNASE13Q5GAN3 156 aaKnown RBP2.67□□□□□ -1.98
LINC00540-201ENST00000611481 IDO2Q6ZQW0 420 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 SAXO1Q8IYX7 474 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 TMEM256Q8N2U0 113 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 C15orf56Q8N910 161 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 OR4C16Q8NGL9 310 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 GNPDA2Q8TDQ7 276 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 YPEL2Q96QA6 119 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 CGREF1Q99674 301 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 CHCHD7Q9BUK0 85 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 TAF9BQ9HBM6 251 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 SND1-IT1Q9HBX3 110 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 SPANXA1Q9NS26 97 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 TVP23BQ9NYZ1 205 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 CCDC167Q9P0B6 97 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 LY96Q9Y6Y9 160 aa2.67□□□□□ -1.98
LINC00540-201ENST00000611481 FCGBPQ9Y6R7 5405 aaPredicted RBP2.67□□□□□ -1.98
LINC00540-201ENST00000611481 TRAV2A0A0B4J234 112 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 TRAV26-2A0A0B4J265 109 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 RIIAD1A6NNX1 92 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 LECT2O14960 151 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 BCL2L11O43521 198 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 PFDN1O60925 122 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 APOMO95445 188 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 LTAP01374 205 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 IFNGP01579 166 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 PRM2P04554 102 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 DEFA4P12838 97 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 HIST1H1BP16401 226 aaKnown RBP2.66□□□□□ -1.98
LINC00540-201ENST00000611481 FLI1Q01543 452 aaPredicted RBP2.66□□□□□ -1.98
LINC00540-201ENST00000611481 FABP9Q0Z7S8 132 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 PSMG4Q5JS54 123 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 GOLT1AQ6ZVE7 132 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 GDPD1Q8N9F7 314 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 OR8D4Q8NGM9 314 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 OR10AC1Q8NH08 325 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 PP6455Q8WZ26 134 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 ADAT3Q96EY9 351 aaPredicted RBP2.66□□□□□ -1.98
LINC00540-201ENST00000611481 GPER1Q99527 375 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 SS18L2Q9UHA2 77 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 ANAPC10Q9UM13 185 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 R4GMQ9 66 aa2.66□□□□□ -1.98
LINC00540-201ENST00000611481 TRAV14DV4A0A0A6YYC5 116 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 G3V2T6 193 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 H3BMM0 161 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 M0R381 172 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 CCNKO75909 580 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 HLA-DQA1P01909 254 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 SHBGP04278 402 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TLX1NBP0CAT3 122 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 EVI2AP22794 236 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 BTN1A1Q13410 526 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM241Q24JQ0 296 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 KRTAP20-1Q3LI63 56 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 VMA21Q3ZAQ7 101 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 AKR1C8PQ5T2L2 129 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 IBA57Q5T440 356 aaKnown RBP2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TMEM78Q5T7P6 136 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 EBLN2Q6P2I7 272 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TOMM20LQ6UXN7 152 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 DAZ4Q86SG3 579 aaKnown RBP2.65□□□□□ -1.99
LINC00540-201ENST00000611481 DHFR2Q86XF0 187 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 ANKRD29Q8N6D5 301 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 CNBD2Q96M20 576 aa2.65□□□□□ -1.99
LINC00540-201ENST00000611481 TBX5Q99593 518 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms