RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 WDR73Q6P4I2 378 aa7.61□□□□□ -1.19
VPS4B-204ENST00000589604 RASL11AQ6T310 242 aa7.61□□□□□ -1.19
VPS4B-204ENST00000589604 FER1L6-AS1Q8NA97 138 aa7.61□□□□□ -1.19
VPS4B-204ENST00000589604 FRZBQ92765 325 aa7.61□□□□□ -1.19
VPS4B-204ENST00000589604 GNB1LQ9BYB4 327 aa7.61□□□□□ -1.19
VPS4B-204ENST00000589604 A0A1B0GUT8 65 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 RNASE3P12724 160 aaKnown RBP7.6□□□□□ -1.19
VPS4B-204ENST00000589604 FABP9Q0Z7S8 132 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 GATD1Q8NB37 220 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 SCRT2Q9NQ03 307 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 NAGKQ9UJ70 344 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 TP53TG3Q9ULZ0 132 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 MUC21A0A0G2JKD1 596 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 MUC21A0A140T8X8 626 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 A8MZ25 164 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 C1orf196B1AJZ1 125 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 OR5AL1P0C617 328 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 HBBP68871 147 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 ZFP82Q8N141 532 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 TPPP3Q9BW30 176 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 MSRB1Q9NZV6 116 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 TRAPPC1Q9Y5R8 145 aa7.6□□□□□ -1.19
VPS4B-204ENST00000589604 IGHV4-4A0A075B6R2 117 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 IGHV1OR15-1A0A075B7D0 117 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 SNURFLB1AK76 121 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 F2Z2F3 143 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 SPRY2O43597 315 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 CAMPP49913 170 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 RIGQ13278 110 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 COX19Q49B96 90 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 PET117Q6UWS5 81 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 FAM159AQ6UWV7 190 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 SBSPONQ8IVN8 264 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 C1orf158Q8N1D5 194 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 XCL2Q9UBD3 114 aa7.59□□□□□ -1.19
VPS4B-204ENST00000589604 IGHV3-16A0A0C4DH30 117 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 H3BS24 57 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 H3BVH4 76 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BKO60814 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 AMBPP02760 352 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 PRM2P04554 102 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BJP06899 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 TRGC1P0CF51 173 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 MED14OSP0DP75 135 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 RPL35AP18077 110 aaKnown RBP7.58□□□□□ -1.2
VPS4B-204ENST00000589604 NTF3P20783 257 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BOP23527 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BBP33778 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BDP58876 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BCP62807 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 SLAQ13239 276 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST2H2BEQ16778 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.58□□□□□ -1.2
VPS4B-204ENST00000589604 ZNF493Q6ZR52 646 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 OR10AG1Q8NH19 301 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BHQ93079 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 KCNS1Q96KK3 526 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BNQ99877 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HIST1H2BMQ99879 126 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 C20orf144Q9BQM9 153 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 LINC00467Q9BRT7 94 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 MDFICQ9P1T7 246 aa7.58□□□□□ -1.2
VPS4B-204ENST00000589604 HUWE1Q7Z6Z7 4374 aaKnown RBP7.58□□□□□ -1.2
VPS4B-204ENST00000589604 A0A1B0GW15 77 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 HLA-DQA1P01909 254 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 MT-ND6P03923 174 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 ASIPP42127 132 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 CSNK1G2-AS1Q8NCQ2 148 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 C9orf85Q96MD7 179 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 NACAE9PAV3 2078 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 NXPH4O95158 308 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 RAB5BP61020 215 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 SSTP61278 116 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 B9D2Q9BPU9 175 aa7.57□□□□□ -1.2
VPS4B-204ENST00000589604 STAB2Q8WWQ8 2551 aa7.56□□□□□ -1.2
VPS4B-204ENST00000589604 GAGE10A6NGK3 116 aa7.56□□□□□ -1.2
VPS4B-204ENST00000589604 INSP01308 110 aa7.56□□□□□ -1.2
VPS4B-204ENST00000589604 RAB4BP61018 213 aa7.56□□□□□ -1.2
VPS4B-204ENST00000589604 KIAA1644Q3SXP7 199 aa7.56□□□□□ -1.2
VPS4B-204ENST00000589604 RETNQ9HD89 108 aa7.56□□□□□ -1.2
VPS4B-204ENST00000589604 APCSP02743 223 aa7.55□□□□□ -1.2
VPS4B-204ENST00000589604 S100A4P26447 101 aaKnown RBP7.55□□□□□ -1.2
VPS4B-204ENST00000589604 NUTF2P61970 127 aaKnown RBP7.55□□□□□ -1.2
VPS4B-204ENST00000589604 CACNG7P62955 275 aa7.55□□□□□ -1.2
VPS4B-204ENST00000589604 TWIST1Q15672 202 aa7.55□□□□□ -1.2
VPS4B-204ENST00000589604 MORN3Q6PF18 240 aaPredicted RBP7.55□□□□□ -1.2
VPS4B-204ENST00000589604 C11orf72Q8NBR9 251 aa7.55□□□□□ -1.2
VPS4B-204ENST00000589604 BORCS7Q96B45 105 aa7.55□□□□□ -1.2
VPS4B-204ENST00000589604 LOC102724200A0A096LPH7 203 aaPredicted RBP7.54□□□□□ -1.2
VPS4B-204ENST00000589604 AZU1P20160 251 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 FAM104BQ5XKR9 115 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 TMEM256Q8N2U0 113 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 RNF185Q96GF1 192 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 TMEM191AQ9H0A3 160 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 TIMM8BQ9Y5J9 83 aaPredicted RBP7.54□□□□□ -1.2
VPS4B-204ENST00000589604 TRGV11A0A075B6L2 103 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 S100A8P05109 93 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 LINC01587Q99440 93 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 TM2D3Q9BRN9 247 aa7.54□□□□□ -1.2
VPS4B-204ENST00000589604 CSTL1Q9H114 145 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms