RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 SPAG8Q99932 426 aaPredicted RBP9.25□□□□□ -0.93
SHMT1-208ENST00000582352 MED14OSP0DP75 135 aa9.25□□□□□ -0.93
SHMT1-208ENST00000582352 RPL11P62913 178 aaKnown RBP9.25□□□□□ -0.93
SHMT1-208ENST00000582352 MORN3Q6PF18 240 aaPredicted RBP9.25□□□□□ -0.93
SHMT1-208ENST00000582352 PRO0461Q9UI25 63 aa9.25□□□□□ -0.93
SHMT1-208ENST00000582352 SRSF9Q13242 221 aaKnown RBP eCLIP9.24□□□□□ -0.93
SHMT1-208ENST00000582352 UNQ9165/PRO28630Q6UXU0 137 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 GPHB5Q86YW7 130 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 SPATA25Q9BR10 227 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 RNF223E7ERA6 249 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 DEFB1P60022 68 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 MUC6Q6W4X9 2439 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 NDUFA4O00483 81 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 CIDEAO60543 219 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 UBTD1Q9HAC8 227 aa9.24□□□□□ -0.93
SHMT1-208ENST00000582352 NDUFS8O00217 210 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 SOCS3O14543 225 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 APOMO95445 188 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 HERVK_113P61574 105 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 DLX4Q92988 240 aaPredicted RBP9.23□□□□□ -0.93
SHMT1-208ENST00000582352 BPESC1Q9GZL8 116 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 A0A1W2PPR1 153 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 DUSP14O95147 198 aaKnown RBP9.23□□□□□ -0.93
SHMT1-208ENST00000582352 TRBV12-3P01733 135 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 NBL1P41271 181 aa9.23□□□□□ -0.93
SHMT1-208ENST00000582352 LINC01549A6NIU2 74 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 GNRH2O43555 120 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 C19orf54Q5BKX5 351 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 PLEKHB2Q96CS7 222 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 IGKV3-7A0A075B6H7 116 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 F6UB75 175 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 RNASE3P12724 160 aaKnown RBP9.22□□□□□ -0.93
SHMT1-208ENST00000582352 COX6B1P14854 86 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 INSL3P51460 131 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 LMO4P61968 165 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 KLRB1Q12918 225 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 TP53TG1Q9Y2A0 90 aa9.22□□□□□ -0.93
SHMT1-208ENST00000582352 IGHV1-69DA0A0B4J2H0 117 aa9.21□□□□□ -0.93
SHMT1-208ENST00000582352 LOC107984156A0A0G2JMH3 177 aa9.21□□□□□ -0.93
SHMT1-208ENST00000582352 PAPPA-AS1Q5QFB9 102 aa9.21□□□□□ -0.93
SHMT1-208ENST00000582352 ARL17AQ8IVW1 177 aa9.21□□□□□ -0.93
SHMT1-208ENST00000582352 IGHV3OR16-10A0A075B7F0 116 aa9.21□□□□□ -0.94
SHMT1-208ENST00000582352 UBE2D1P51668 147 aa9.21□□□□□ -0.94
SHMT1-208ENST00000582352 LYRM7Q5U5X0 104 aa9.21□□□□□ -0.94
SHMT1-208ENST00000582352 FAM19A4Q96LR4 140 aa9.21□□□□□ -0.94
SHMT1-208ENST00000582352 C1QTNF4Q9BXJ3 329 aa9.21□□□□□ -0.94
SHMT1-208ENST00000582352 C11orf86A6NJI1 115 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 CRIP2P52943 208 aaPredicted RBP9.2□□□□□ -0.94
SHMT1-208ENST00000582352 EMP1P54849 157 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 CFAP126Q5VTH2 177 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 SFTA2Q6UW10 78 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 KLHL30-AS1Q8NEE0 82 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 NXPH4O95158 308 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 TSPAN13O95857 204 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 APRG1Q8IVJ8 170 aa9.2□□□□□ -0.94
SHMT1-208ENST00000582352 IGLV4-69A0A075B6H9 119 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 TRBV7-9A0A0J9YWB2 115 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 A0A1B0GV72 72 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 IGHV3-11P01762 117 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 CRYGDP07320 174 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 PSMB2P49721 201 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 KIR2DL4Q99706 377 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 PMVKQ15126 192 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 POM121L12Q8N7R1 296 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 ATP6V0E2Q8NHE4 81 aa9.19□□□□□ -0.94
SHMT1-208ENST00000582352 RPL32P62910 135 aaKnown RBP9.18□□□□□ -0.94
SHMT1-208ENST00000582352 FAM159AQ6UWV7 190 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 ZFP2Q6ZN57 461 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 ATRXP46100 2492 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 TSHBP01222 138 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 FOXI1Q12951 378 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 USMG5Q96IX5 58 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 AKAP6Q13023 2319 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 MUC4Q99102 2169 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 IGHV4OR15-8A0A075B7B6 117 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 A0A087WW49 117 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 IGIPA6NJ69 53 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 F5H697 171 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 CD7P09564 240 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 TMEM170BQ5T4T1 132 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 SUMO4Q6EEV6 95 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 BRD3OSQ6XYD6 125 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 ZNF418Q8TF45 676 aaPredicted RBP9.18□□□□□ -0.94
SHMT1-208ENST00000582352 DEFB104AQ8WTQ1 72 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 RHPN1-AS1Q9BWJ2 59 aa9.18□□□□□ -0.94
SHMT1-208ENST00000582352 A0A0J9YY99 117 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 PF4V1P10720 104 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 RPL39P62891 51 aaKnown RBP9.17□□□□□ -0.94
SHMT1-208ENST00000582352 KIF25-AS1Q9Y6Z4 181 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 A0A087WWL8 130 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 VCYO14598 125 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 IGHV1-69P01742 117 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 SMCPP49901 116 aaPredicted RBP9.17□□□□□ -0.94
SHMT1-208ENST00000582352 LINC00315P59091 139 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 UBE2D3P61077 147 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 UBE2D2P62837 147 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 NDUFA11Q86Y39 141 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 TIMM17AQ99595 171 aa9.17□□□□□ -0.94
SHMT1-208ENST00000582352 COL6A6A6NMZ7 2263 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms