RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 M0R381 172 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 COX6B1P14854 86 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 LAGE3Q14657 143 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 C10orf99Q6UWK7 81 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 ZMAT4Q9H898 229 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 PHLDA3Q9Y5J5 127 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 SMIM17P0DL12 118 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 PTTG1IPP53801 180 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 MAPK1IP1LQ8NDC0 245 aa7.58□□□□□ -1.2
VPS53-220ENST00000576149 KLLNB2CW77 178 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 TAX1BP3O14907 124 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 GNRH2O43555 120 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 SPRY2O43597 315 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 PRSS1P07477 247 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 RNASE3P12724 160 aaKnown RBP7.57□□□□□ -1.2
VPS53-220ENST00000576149 SRSF1Q07955 248 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS53-220ENST00000576149 CSMD2Q7Z408 3487 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 ATP5LO75964 103 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 FSHBP01225 129 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 PSMG4Q5JS54 123 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 BBC3Q96PG8 261 aaPredicted RBP7.57□□□□□ -1.2
VPS53-220ENST00000576149 DPH3P1Q9H4G8 78 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 HHLA3Q9XRX5 114 aa7.57□□□□□ -1.2
VPS53-220ENST00000576149 C4orf48Q5BLP8 95 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 C14orf178Q8N769 122 aaPredicted RBP7.56□□□□□ -1.2
VPS53-220ENST00000576149 RASL10AQ92737 203 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 SMIM2Q9BVW6 85 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 VPREB3Q9UKI3 123 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 RNF223E7ERA6 249 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 CCL25O15444 150 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 TCTAP57738 103 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 UBE2V1Q13404 147 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 TMEM97Q5BJF2 176 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 OR9G4Q8NGQ1 327 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 MYOZ3Q8TDC0 251 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 FOXC2Q99958 501 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 C20orf78Q9BR46 151 aa7.56□□□□□ -1.2
VPS53-220ENST00000576149 ACACBO00763 2458 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 CELSR2Q9HCU4 2923 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 NXPH4O95158 308 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 IGKCP01834 107 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 NMUP48645 174 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 SUMO2P61956 95 aaKnown RBP7.55□□□□□ -1.2
VPS53-220ENST00000576149 Q6YL49 198 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 CSPG4Q6UVK1 2322 aa7.55□□□□□ -1.2
VPS53-220ENST00000576149 A1L4Q6 167 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 IGHV4-31P0DP07 118 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 PCP2Q8IVA1 136 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 POM121L12Q8N7R1 296 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 AP1S3Q96PC3 154 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 K7EMI3 77 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 DPM2O94777 84 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 ELANEP08246 267 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 LGALS1P09382 135 aaKnown RBP7.54□□□□□ -1.2
VPS53-220ENST00000576149 SEC11AP67812 179 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 FAM159AQ6UWV7 190 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 RPL39LQ96EH5 51 aaKnown RBP7.54□□□□□ -1.2
VPS53-220ENST00000576149 ZNF702PQ9H963 129 aa7.54□□□□□ -1.2
VPS53-220ENST00000576149 A0A0U1RRA0 63 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 ORMDL2Q53FV1 153 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 ADAMTSL5Q6ZMM2 481 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 ZNF843Q8N446 348 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 ODF3Q96PU9 254 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 IGKV2D-26A0A0A0MRZ7 120 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 C7orf71A4D174 169 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 K7EQG2 157 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 LGALS9O00182 355 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 MGPP08493 103 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 ZNF688P0C7X2 276 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 SYNJ2BPP57105 145 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 KRTAP10-9P60411 292 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 KIF25-AS1Q9Y6Z4 181 aa7.53□□□□□ -1.2
VPS53-220ENST00000576149 IGHV4OR15-8A0A075B7B6 117 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 A0A087WW49 117 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 A0A087WX48 190 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 A0A0J9YX75 114 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 PPP1R17O96001 155 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 LINC00315P59091 139 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 SNRPD3P62318 126 aaKnown RBP7.52□□□□□ -1.2
VPS53-220ENST00000576149 HSD52Q0P140 79 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 CRYBG3Q68DQ2 2970 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 UBE2E2Q96LR5 201 aa7.52□□□□□ -1.2
VPS53-220ENST00000576149 MRPL35Q9NZE8 188 aaKnown RBP7.52□□□□□ -1.2
VPS53-220ENST00000576149 FBN2P35556 2912 aa7.52□□□□□ -1.21
VPS53-220ENST00000576149 TRAV12-3A0A0B4J271 114 aa7.52□□□□□ -1.21
VPS53-220ENST00000576149 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.52□□□□□ -1.21
VPS53-220ENST00000576149 VAMP3Q15836 100 aa7.52□□□□□ -1.21
VPS53-220ENST00000576149 ZC2HC1BQ5TFG8 222 aa7.52□□□□□ -1.21
VPS53-220ENST00000576149 TOMM6Q96B49 74 aa7.52□□□□□ -1.21
VPS53-220ENST00000576149 MYO18BQ8IUG5 2567 aa7.52□□□□□ -1.21
VPS53-220ENST00000576149 UTP20O75691 2785 aaKnown RBP7.52□□□□□ -1.21
VPS53-220ENST00000576149 HOXA3O43365 443 aaPredicted RBP7.51□□□□□ -1.21
VPS53-220ENST00000576149 HOXD3P31249 432 aaPredicted RBP7.51□□□□□ -1.21
VPS53-220ENST00000576149 DEFB113Q30KQ7 82 aa7.51□□□□□ -1.21
VPS53-220ENST00000576149 BEX4Q9NWD9 120 aaPredicted RBP7.51□□□□□ -1.21
VPS53-220ENST00000576149 TRAV12-1A0A0B4J245 112 aa7.51□□□□□ -1.21
VPS53-220ENST00000576149 CD7P09564 240 aa7.51□□□□□ -1.21
VPS53-220ENST00000576149 MAP1AP78559 2803 aaPredicted RBP7.51□□□□□ -1.21
VPS53-220ENST00000576149 GTSCR1Q86UQ5 136 aa7.51□□□□□ -1.21
VPS53-220ENST00000576149 TSPAN13O95857 204 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms