RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 CXCL8P10145 99 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 GNGT1P63211 74 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 MIR22HGQ0VDD5 57 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 MPV17LQ2QL34 196 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 KRTAP25-1Q3LHN0 102 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 ZCCHC23Q6ZST2 131 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 HIGD2AQ9BW72 106 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 NXT2Q9NPJ8 142 aaKnown RBP3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 LINC00474Q9P2X8 69 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 MYO10Q9HD67 2058 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 KIF26BQ2KJY2 2108 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 ABCA8O94911 1581 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 NMSQ5H8A3 153 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 CMTM2Q8TAZ6 248 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 SHROOM2Q13796 1616 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 COL1A2P08123 1366 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 COL24A1Q17RW2 1714 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 TNS1Q9HBL0 1735 aaKnown RBP3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 LTN1O94822 1766 aa3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 EDC4Q6P2E9 1401 aaKnown RBP3.1□□□□□ -1.91
TOPBP1-210ENST00000572787 COL2A1P02458 1487 aaPredicted RBP3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 CDK12Q9NYV4 1490 aaPredicted RBP3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 SHANK2Q9UPX8 1470 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 THADAQ6YHU6 1953 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 TRPM6Q9BX84 2022 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 IGLV2-18A0A075B6J9 118 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 IGKV3D-11A0A0A0MRZ8 115 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 TRBV7-1A0A0A6YYK4 115 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 TRAV12-1A0A0B4J245 112 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 WFDC2Q14508 124 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 DEFB113Q30KQ7 82 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 SPATA45Q537H7 98 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 KPRPQ5T749 579 aaPredicted RBP3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 SPTSSBQ8NFR3 76 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 KLK12Q9UKR0 248 aa3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 RGPD3A6NKT7 1758 aaPredicted RBP3.09□□□□□ -1.91
TOPBP1-210ENST00000572787 PTPRMP28827 1452 aa3.09□□□□□ -1.92
TOPBP1-210ENST00000572787 NRXN1Q9ULB1 1477 aa3.09□□□□□ -1.92
TOPBP1-210ENST00000572787 SCN1AP35498 2009 aa3.09□□□□□ -1.92
TOPBP1-210ENST00000572787 HEATR5AQ86XA9 2040 aa3.09□□□□□ -1.92
TOPBP1-210ENST00000572787 ABCC1P33527 1531 aa3.09□□□□□ -1.92
TOPBP1-210ENST00000572787 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.09□□□□□ -1.92
TOPBP1-210ENST00000572787 UNC13BO14795 1591 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 KIF21AQ7Z4S6 1674 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 STRCQ7RTU9 1775 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 SLX4Q8IY92 1834 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 PLXNA4Q9HCM2 1894 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 IGKV3D-15A0A087WSY6 115 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 HCG22E2RYF7 251 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 IGKV3-11P04433 115 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 ASAH2BP0C7U1 165 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 ERHP84090 104 aaKnown RBP3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 PMCHL1Q16048 86 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 C14orf177Q52M58 125 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 SPINT4Q6UDR6 99 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 NDUFA11Q86Y39 141 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 SCRT1Q9BWW7 348 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 CDC42SE1Q9NRR8 79 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 MLH3Q9UHC1 1453 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 SETBP1Q9Y6X0 1596 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 KDM6BO15054 1643 aa3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 PPRC1Q5VV67 1664 aaKnown RBP3.08□□□□□ -1.92
TOPBP1-210ENST00000572787 A0A087WYN8 130 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 H3BUT2 72 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 BCE1O60756 84 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 SMIM11AP58511 58 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 SNRPFP62306 86 aaKnown RBP3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 ZNF79Q15937 498 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 ZNF791Q3KP31 576 aaPredicted RBP3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 CYP2G1PQ6ZSU1 146 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 LINC00612Q8N6U2 182 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 Q8TAT8 98 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 C18orf32Q8TCD1 76 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 LINC01600Q96MT4 127 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 PRO0461Q9UI25 63 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 LHFPL6Q9Y693 200 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 CUX1P39880 1505 aa3.07□□□□□ -1.92
TOPBP1-210ENST00000572787 TMSB15BA0A087X1C1 80 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 LRP5O75197 1615 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 SIX6O95475 246 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 ACYP1P07311 99 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 PLA2R1Q13018 1463 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 ZNF833PQ6ZTB9 187 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 KCPQ6ZWJ8 1503 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 SH2D6Q7Z4S9 175 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 KRTAP7-1Q8IUC3 87 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 COL27A1Q8IZC6 1860 aaPredicted RBP3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 Q8N9P0 234 aaPredicted RBP3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 MAPK1IP1LQ8NDC0 245 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 TIMM21Q9BVV7 248 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 DUOX2Q9NRD8 1548 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 SCN11AQ9UI33 1791 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 PSORS1C2Q9UIG4 136 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 C22orf24Q9Y442 160 aa3.06□□□□□ -1.92
TOPBP1-210ENST00000572787 LCTP09848 1927 aa3.05□□□□□ -1.92
TOPBP1-210ENST00000572787 MGAMO43451 1857 aa3.05□□□□□ -1.92
TOPBP1-210ENST00000572787 KNDC1Q76NI1 1749 aa3.05□□□□□ -1.92
TOPBP1-210ENST00000572787 SHANK3Q9BYB0 1731 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms