RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 BAALCQ8WXS3 180 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 GAGE12HA6NDE8 117 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 LGALS1P09382 135 aaKnown RBP8.18□□□□□ -1.1
CCDC40-207ENST00000572253 UCNP55089 124 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 AMTNQ6UX39 209 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 AJUBAQ96IF1 538 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 AGRNO00468 2067 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 ASPMQ8IZT6 3477 aa8.17□□□□□ -1.1
CCDC40-207ENST00000572253 A0A1B0GWB2 263 aa8.17□□□□□ -1.1
CCDC40-207ENST00000572253 IGF1P05019 195 aa8.17□□□□□ -1.1
CCDC40-207ENST00000572253 LINC00527Q9UJ94 153 aa8.17□□□□□ -1.1
CCDC40-207ENST00000572253 AZU1P20160 251 aa8.17□□□□□ -1.1
CCDC40-207ENST00000572253 PGPEP1Q9NXJ5 209 aa8.17□□□□□ -1.1
CCDC40-207ENST00000572253 BPESC1Q9GZL8 116 aa8.16□□□□□ -1.1
CCDC40-207ENST00000572253 SMG1Q96Q15 3661 aaKnown RBP8.16□□□□□ -1.1
CCDC40-207ENST00000572253 IGHV1-69DA0A0B4J2H0 117 aa8.16□□□□□ -1.1
CCDC40-207ENST00000572253 SPRY2O43597 315 aa8.16□□□□□ -1.1
CCDC40-207ENST00000572253 SH2D6Q7Z4S9 175 aa8.16□□□□□ -1.1
CCDC40-207ENST00000572253 DLX4Q92988 240 aaPredicted RBP8.16□□□□□ -1.1
CCDC40-207ENST00000572253 USMG5Q96IX5 58 aa8.16□□□□□ -1.1
CCDC40-207ENST00000572253 TRBV7-9A0A0J9YWB2 115 aa8.15□□□□□ -1.1
CCDC40-207ENST00000572253 LMO4P61968 165 aa8.15□□□□□ -1.1
CCDC40-207ENST00000572253 KIR2DL4Q99706 377 aa8.15□□□□□ -1.1
CCDC40-207ENST00000572253 DMXL1Q9Y485 3027 aa8.15□□□□□ -1.1
CCDC40-207ENST00000572253 IGKV3-7A0A075B6H7 116 aa8.15□□□□□ -1.11
CCDC40-207ENST00000572253 LOC107984156A0A0G2JMH3 177 aa8.15□□□□□ -1.11
CCDC40-207ENST00000572253 UNQ9165/PRO28630Q6UXU0 137 aa8.15□□□□□ -1.11
CCDC40-207ENST00000572253 ARL17AQ8IVW1 177 aa8.15□□□□□ -1.11
CCDC40-207ENST00000572253 SPAG8Q99932 426 aaPredicted RBP8.15□□□□□ -1.11
CCDC40-207ENST00000572253 IGHV3OR16-10A0A075B7F0 116 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 F5H697 171 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 APOMO95445 188 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 CRIP2P52943 208 aaPredicted RBP8.14□□□□□ -1.11
CCDC40-207ENST00000572253 FAM159AQ6UWV7 190 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 DMXL2Q8TDJ6 3036 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 GNRH2O43555 120 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 PF4V1P10720 104 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 ID1P41134 155 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 TTC32Q5I0X7 151 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 KALRNO60229 2985 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 H3BUA1 57 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 TMEM141Q96I45 108 aa8.14□□□□□ -1.11
CCDC40-207ENST00000572253 VCYO14598 125 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 DUSP14O95147 198 aaKnown RBP8.13□□□□□ -1.11
CCDC40-207ENST00000572253 IGHV3-11P01762 117 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 PMVKQ15126 192 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 SPATA25Q9BR10 227 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 TP53TG1Q9Y2A0 90 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 SOCS3O14543 225 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 RPL32P62910 135 aaKnown RBP8.13□□□□□ -1.11
CCDC40-207ENST00000572253 CEP295Q9C0D2 2601 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 IGHV1-69P01742 117 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 CKS1BP61024 79 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 GPHB5Q86YW7 130 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 RHPN1-AS1Q9BWJ2 59 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 PIEZO1Q92508 2521 aa8.13□□□□□ -1.11
CCDC40-207ENST00000572253 F6UB75 175 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 TRBV12-3P01733 135 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 RPL13AP40429 203 aaKnown RBP8.12□□□□□ -1.11
CCDC40-207ENST00000572253 PSMB2P49721 201 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 DEFB1P60022 68 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 MORN3Q6PF18 240 aaPredicted RBP8.12□□□□□ -1.11
CCDC40-207ENST00000572253 LCNL1Q6ZST4 164 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 TACC2O95359 2948 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 RNASE3P12724 160 aaKnown RBP8.12□□□□□ -1.11
CCDC40-207ENST00000572253 C19orf54Q5BKX5 351 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 Q1RN00 199 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 PRO0461Q9UI25 63 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 NCOR2Q9Y618 2525 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 A0A1W2PPR1 153 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 C11orf86A6NJI1 115 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 LY6EQ16553 131 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 TMEM170BQ5T4T1 132 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 ZFP2Q6ZN57 461 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 ATP6V0E2Q8NHE4 81 aa8.12□□□□□ -1.11
CCDC40-207ENST00000572253 IGHV4OR15-8A0A075B7B6 117 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 A0A087WW49 117 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 APRG1Q8IVJ8 170 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 PLEKHB2Q96CS7 222 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 IGF2RP11717 2491 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 NXPH4O95158 308 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 FAM19A4Q96LR4 140 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 C1QTNF4Q9BXJ3 329 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 DAZ1Q9NQZ3 744 aaKnown RBP8.11□□□□□ -1.11
CCDC40-207ENST00000572253 UBE2D1P51668 147 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 BRD3OSQ6XYD6 125 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 KLHL30-AS1Q8NEE0 82 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 TIMM17AQ99595 171 aa8.11□□□□□ -1.11
CCDC40-207ENST00000572253 RNF223E7ERA6 249 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 CD7P09564 240 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 LGALS3P17931 250 aaKnown RBP8.1□□□□□ -1.11
CCDC40-207ENST00000572253 SUMO4Q6EEV6 95 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 SYT8Q8NBV8 401 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 COX6B1P14854 86 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 POM121L12Q8N7R1 296 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 TSPAN13O95857 204 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 EMP1P54849 157 aa8.1□□□□□ -1.11
CCDC40-207ENST00000572253 ZNF418Q8TF45 676 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-207ENST00000572253 ATMQ13315 3056 aa8.09□□□□□ -1.11
CCDC40-207ENST00000572253 SDHAF1A6NFY7 115 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms