RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ST20Q9HBF5 79 aa6.68□□□□□ -1.34
LINC00558-201ENST00000569422 HBDP02042 147 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 S100A4P26447 101 aaKnown RBP6.67□□□□□ -1.34
LINC00558-201ENST00000569422 MAP1LC3AQ9H492 121 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 MRPS16Q9Y3D3 137 aaKnown RBP6.67□□□□□ -1.34
LINC00558-201ENST00000569422 TLN2Q9Y4G6 2542 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 IGKV3-20P01619 116 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 NMUP48645 174 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 LINC01545Q5VT33 79 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 RNF183Q96D59 192 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 DKK2Q9UBU2 259 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 PRSS1P07477 247 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 RNASE4P34096 147 aaKnown RBP6.67□□□□□ -1.34
LINC00558-201ENST00000569422 IFI27L1Q96BM0 104 aa6.67□□□□□ -1.34
LINC00558-201ENST00000569422 FAM223BA6NKX1 122 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 FAM223AQ8IWN6 122 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 NPFFR1Q9GZQ6 430 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 SCRT2Q9NQ03 307 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 NAV2Q8IVL1 2488 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 EPG5Q9HCE0 2579 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 GAGE12BA1L429 117 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 IGHV4-59P01825 116 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 GATD1Q8NB37 220 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 OR10J6PQ8NGY7 276 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 RHPN1-AS1Q9BWJ2 59 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 MRPL16Q9NX20 251 aaKnown RBP6.66□□□□□ -1.34
LINC00558-201ENST00000569422 U3KQK5 164 aa6.66□□□□□ -1.34
LINC00558-201ENST00000569422 SORL1Q92673 2214 aa6.65□□□□□ -1.34
LINC00558-201ENST00000569422 COX8CQ7Z4L0 72 aa6.65□□□□□ -1.34
LINC00558-201ENST00000569422 GPHB5Q86YW7 130 aa6.65□□□□□ -1.34
LINC00558-201ENST00000569422 TMEM158Q8WZ71 300 aa6.65□□□□□ -1.34
LINC00558-201ENST00000569422 RBAKDNA6NC62 111 aa6.65□□□□□ -1.35
LINC00558-201ENST00000569422 GNRH2O43555 120 aa6.65□□□□□ -1.35
LINC00558-201ENST00000569422 IGHG2P01859 326 aa6.65□□□□□ -1.35
LINC00558-201ENST00000569422 MGPP08493 103 aa6.65□□□□□ -1.35
LINC00558-201ENST00000569422 TTTY13Q9BZ97 58 aa6.65□□□□□ -1.35
LINC00558-201ENST00000569422 IGHV7-4-1A0A0J9YVY3 117 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 C7orf71A4D174 169 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 A6NDX4 124 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 DEFB112Q30KQ8 113 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 HIST2H2BDQ6DRA6 164 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 C9orf139Q6ZV77 190 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 C14orf178Q8N769 122 aaPredicted RBP6.64□□□□□ -1.35
LINC00558-201ENST00000569422 TMEM190Q8WZ59 177 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 U3KQE9 123 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 ANKRD17O75179 2603 aaKnown RBP6.64□□□□□ -1.35
LINC00558-201ENST00000569422 B4DSR2 109 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 NDUFA4O00483 81 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 OR2K2Q8NGT1 345 aa6.64□□□□□ -1.35
LINC00558-201ENST00000569422 TINCRA0A1B0GVN0 87 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 ANXA2RQ3ZCQ2 193 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 BVES-AS1Q5T3Y7 98 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 C9orf47Q6ZRZ4 202 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 PCP2Q8IVA1 136 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 FOXC2Q99958 501 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 NAA38Q9BRA0 125 aaKnown RBP6.63□□□□□ -1.35
LINC00558-201ENST00000569422 SONP18583 2426 aaKnown RBP6.63□□□□□ -1.35
LINC00558-201ENST00000569422 C19orf54Q5BKX5 351 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 MS4A6AQ9H2W1 248 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 PHLDA3Q9Y5J5 127 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 FBN2P35556 2912 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 MYO9AB2RTY4 2548 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 SMIM17P0DL12 118 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 COX8AP10176 69 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 ZNF418Q8TF45 676 aaPredicted RBP6.63□□□□□ -1.35
LINC00558-201ENST00000569422 PEMTQ9UBM1 199 aa6.63□□□□□ -1.35
LINC00558-201ENST00000569422 RNF223E7ERA6 249 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 USMG5Q96IX5 58 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 DUX3Q96PT4 197 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 CCDC168Q8NDH2 2452 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 ZNF688P0C7X2 276 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 GTSCR1Q86UQ5 136 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 ZFAND2AQ8N6M9 145 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 DNAJC30Q96LL9 226 aa6.62□□□□□ -1.35
LINC00558-201ENST00000569422 LGALS9BQ3B8N2 356 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 LGALS9CQ6DKI2 356 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 C12orf54Q6X4T0 127 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 NEGR1Q7Z3B1 354 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 RPL39LQ96EH5 51 aaKnown RBP6.61□□□□□ -1.35
LINC00558-201ENST00000569422 CNFNQ9BYD5 112 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 NXT2Q9NPJ8 142 aaKnown RBP6.61□□□□□ -1.35
LINC00558-201ENST00000569422 DAZ1Q9NQZ3 744 aaKnown RBP6.61□□□□□ -1.35
LINC00558-201ENST00000569422 USP24Q9UPU5 2620 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 SETD2Q9BYW2 2564 aaPredicted RBP6.61□□□□□ -1.35
LINC00558-201ENST00000569422 TRAV12-2A0A075B6T6 113 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 TRAV21A0A0B4J279 112 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 A0A0G2JLM5 398 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 FCER1GP30273 86 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 C2orf91Q6ZV80 131 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 RAB37Q96AX2 223 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 LINC00477Q96M19 166 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 TRAV12-3A0A0B4J271 114 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 HTN1P15515 57 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 ASIPP42127 132 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 LINC01620Q4KN68 170 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 LINC00336Q6ZUF6 198 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 PSMG3-AS1Q96PY0 264 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 SPATA25Q9BR10 227 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 JPT2Q9H910 190 aa6.61□□□□□ -1.35
LINC00558-201ENST00000569422 OVOL1O14753 267 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms