RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CFC1BP0CG36 223 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 CFC1P0CG37 223 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 RBMY1A1P0DJD3 496 aaKnown RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 RBMY1CP0DJD4 496 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 RNASE2P10153 161 aaKnown RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 RPS27P42677 84 aaKnown RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 XCL1P47992 114 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 RIGQ13278 110 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 RBMY1FQ15415 496 aaKnown RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 ATP5EP2Q5VTU8 51 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 SFTA2Q6UW10 78 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 LYPD5Q6UWN5 251 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 C16orf47Q6ZP98 133 aaPredicted RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 MKXQ8IYA7 352 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 NUP37Q8NFH4 326 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 Q9H8V8 135 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 ZNF71Q9NQZ8 489 aaPredicted RBP2.39□□□□□ -2.03
VPS35-208ENST00000568612 XCL2Q9UBD3 114 aa2.39□□□□□ -2.03
VPS35-208ENST00000568612 DYSFO75923 2080 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1D-42A0A075B6H8 117 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 TRAV13-2A0A0B4J235 113 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 TRAV12-1A0A0B4J245 112 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 IGHV1OR15-9A0A0B4J2B8 117 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 H7C423 109 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 TMEM256-PLSCR3K7ERE1 68 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 M0R135 149 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 M0R378 163 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 LST1O00453 97 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1-39P01597 117 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1-5P01602 117 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1D-39P04432 117 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 P0C879 139 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 INAFM2P0DMQ5 153 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 COX6B1P14854 86 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 HMGA1P17096 107 aaKnown RBP2.38□□□□□ -2.03
VPS35-208ENST00000568612 CD24P25063 80 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 ZNF137PP52743 207 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 EDDM3BP56851 147 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 FGF12P61328 243 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 RPS18P62269 152 aaKnown RBP2.38□□□□□ -2.03
VPS35-208ENST00000568612 UBE2BP63146 152 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 RBM3P98179 157 aaKnown RBP2.38□□□□□ -2.03
VPS35-208ENST00000568612 VN1R4Q7Z5H5 301 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 SLC25A29Q8N8R3 303 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 FGFBP3Q8TAT2 258 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 TMEM263Q8WUH6 116 aaKnown RBP2.38□□□□□ -2.03
VPS35-208ENST00000568612 ZNF524Q96C55 264 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 Q9H3A6 140 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 LINC00474Q9P2X8 69 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 LINC00588Q9Y4M8 146 aa2.38□□□□□ -2.03
VPS35-208ENST00000568612 MPDZO75970 2070 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.37□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1D-13A0A0B4J2D9 117 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 A0A1B0GUT8 65 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 ZNF815PA8K554 130 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 E7EQL1 145 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 E7EUB6 86 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 F8VRH5 84 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 CCL24O00175 119 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 UBE2L6O14933 153 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 IGHV3-30P01768 117 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 IGHV3-30-5P0DP03 117 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1-13P0DP09 117 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 LAGE3Q14657 143 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 PLGLAQ15195 96 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 RHOHQ15669 191 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 ESRGQ1W209 222 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 ZNF876PQ49A33 203 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 FAM222AQ5U5X8 452 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 GUSBP11Q6P575 273 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 VMO1Q7Z5L0 202 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 ORMDL3Q8N138 153 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 C20orf197Q8N268 126 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.37□□□□□ -2.03
VPS35-208ENST00000568612 TET1Q8NFU7 2136 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 SPACA5Q96QH8 159 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 SMIM14Q96QK8 99 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 TIMM17AQ99595 171 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 TIMM21Q9BVV7 248 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 HEATR1Q9H583 2144 aaKnown RBP2.37□□□□□ -2.03
VPS35-208ENST00000568612 MRPL35Q9NZE8 188 aaKnown RBP2.37□□□□□ -2.03
VPS35-208ENST00000568612 CTSZQ9UBR2 303 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 UBE2D4Q9Y2X8 147 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 MYO7AQ13402 2215 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 POLEQ07864 2286 aa2.37□□□□□ -2.03
VPS35-208ENST00000568612 ADAMTS9Q9P2N4 1935 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1D-17A0A075B6S4 117 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 TRAV7A0A075B6U4 112 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGLV3-32A0A0A0MS00 114 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGKV6D-21A0A0A0MT36 114 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1D-43A0A0B4J1Z2 117 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 TRAV40A0A0B4J280 105 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGKV6-21A0A0C4DH24 114 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGKV1-9A0A0C4DH69 117 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 A0A0J9YY99 117 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 TMEM223A0PJW6 202 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 SMIM1B2RUZ4 78 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 D6R8Y8 96 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 NXPH4O95158 308 aa2.36□□□□□ -2.03
VPS35-208ENST00000568612 IGLV3-1P01715 115 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms