RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 NOP16Q9Y3C1 178 aaKnown RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 IER3IP1Q9Y5U9 82 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 LHFPL6Q9Y693 200 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 CHCHD2Q9Y6H1 151 aaPredicted RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 SERP1Q9Y6X1 66 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 ROBO1Q9Y6N7 1651 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 TROQ12816 1431 aaPredicted RBP0.61□□□□□ -2.31
VPS35-207ENST00000568191 WNK3Q9BYP7 1800 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 EXPH5Q8NEV8 1989 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 AHCTF1Q8WYP5 2266 aa0.61□□□□□ -2.31
VPS35-207ENST00000568191 LRP5O75197 1615 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 F5P12259 2224 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 SIP14410 1827 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 PATJQ8NI35 1801 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 A0A087WSZ3 146 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 TRAV10A0A0B4J240 114 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 TRAV12-1A0A0B4J245 112 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 TCRBV4S1A1TA0A5B7 111 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 C2orf70A6NJV1 201 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 ZNF705FA8MVS1 300 aaPredicted RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 MCRIP1C9JLW8 97 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 E7EUB6 86 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 J3QLW9 94 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 GEMIN2O14893 280 aaKnown RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 EDF1O60869 148 aaKnown RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 HYPMO75409 117 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 KLF7O75840 302 aaPredicted RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 UBL3O95164 117 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 S100A10P60903 97 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 RPL26P61254 145 aaKnown RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 CATR1Q13166 79 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 Q56UQ5 140 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 COL5A1-AS1Q5SY13 56 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 C9orf153Q5TBE3 101 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 Q6AWC8 147 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 MRPL54Q6P161 138 aaKnown RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 C2orf82Q6UX34 121 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 CASC2Q6XLA1 102 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 ATP11AUNQ6ZP68 121 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 Q6ZS92 163 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 ZCCHC23Q6ZST2 131 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 Q6ZTI0 123 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 C9orf163Q8N9P6 203 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 VSTM2AQ8TAG5 236 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 Q8TAT8 98 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 TMEM254Q8TBM7 123 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 SFT2D1Q8WV19 159 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 LINC00526Q96FQ7 95 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 Q96M85 177 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 SMIM7Q9BQ49 75 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 SPANXDQ9BXN6 97 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 SNHG12Q9BXW3 62 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 TAS2R8Q9NYW2 309 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 PTPRMP28827 1452 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 SHROOM2Q13796 1616 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 LAMB4A4D0S4 1761 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 MUC22E2RYF6 1773 aaPredicted RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 NCOA6Q14686 2063 aaPredicted RBP0.6□□□□□ -2.31
VPS35-207ENST00000568191 CACNA1CQ13936 2221 aa0.6□□□□□ -2.31
VPS35-207ENST00000568191 DOCK2Q92608 1830 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 KDM5AP29375 1690 aaKnown RBP0.59□□□□□ -2.31
VPS35-207ENST00000568191 TOPAZ1Q8N9V7 1692 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ARHGAP5Q13017 1502 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ANKRD17O75179 2603 aaKnown RBP0.59□□□□□ -2.31
VPS35-207ENST00000568191 TANC1Q9C0D5 1861 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 PLXNA1Q9UIW2 1896 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 CHD1O14646 1710 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 NWD2Q9ULI1 1742 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 BAZ1AQ9NRL2 1556 aaPredicted RBP0.59□□□□□ -2.31
VPS35-207ENST00000568191 PPIP5K1Q6PFW1 1433 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 DNAJC13O75165 2243 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 TRAV14DV4A0A0A6YYC5 116 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 LOC107984156A0A0G2JMH3 177 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 OOSP1A8MZH6 123 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 APOC4-APOC2K7ER74 178 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ERC2-IT1O76042 136 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 MPC2O95563 127 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 APOC2P02655 101 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 IL5P05113 134 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 SPINK8P0C7L1 97 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 CXCL8P10145 99 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 IFITM1P13164 125 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ADCYAP1P18509 176 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 PDE6HQ13956 83 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ELOBQ15370 118 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 TPRXLQ17RH7 258 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 OR2T2Q6IF00 324 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 KRTAP26-1Q6PEX3 210 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 FOXI2Q6ZQN5 318 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ZNF833PQ6ZTB9 187 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 SLC25A26Q70HW3 274 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 FP248Q71RG6 208 aaPredicted RBP0.59□□□□□ -2.31
VPS35-207ENST00000568191 ARL17AQ8IVW1 177 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 CLECL1Q8IZS7 167 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 SVBPQ8N300 66 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 TTC9CQ8N5M4 171 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 C5orf17Q8NAS9 161 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 PLPP5Q8NEB5 264 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 ZNF563Q8TA94 476 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 SPACA4Q8TDM5 124 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms