RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 PTPN13Q12923 2485 aa8.15□□□□□ -1.1
USB1-212ENST00000566082 H3BUX3 64 aa8.15□□□□□ -1.1
USB1-212ENST00000566082 C10orf126Q8N4M7 172 aa8.15□□□□□ -1.1
USB1-212ENST00000566082 C20orf78Q9BR46 151 aa8.15□□□□□ -1.1
USB1-212ENST00000566082 COL4A2P08572 1712 aa8.15□□□□□ -1.11
USB1-212ENST00000566082 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.15□□□□□ -1.11
USB1-212ENST00000566082 TCF15Q12870 199 aa8.15□□□□□ -1.11
USB1-212ENST00000566082 DUSP14O95147 198 aaKnown RBP8.14□□□□□ -1.11
USB1-212ENST00000566082 C19orf54Q5BKX5 351 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 MAPKAPK5-AS1Q8N8E1 139 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 MUC6Q6W4X9 2439 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 LAMA5O15230 3695 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 ADARB2-AS1A8MUL3 147 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 M0R2P5 195 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 IGLC6P0CF74 106 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 KLRB1Q12918 225 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 PIMREGQ9BSJ6 248 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 J3QQQ9 107 aa8.14□□□□□ -1.11
USB1-212ENST00000566082 SLC25A20O43772 301 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 ATXN8Q156A1 80 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 PLEKHB2Q96CS7 222 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 TRAV12-2A0A075B6T6 113 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 NPBQ8NG41 125 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 MYO9AB2RTY4 2548 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 UBE2E1P51965 193 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 C1QTNF4Q9BXJ3 329 aa8.13□□□□□ -1.11
USB1-212ENST00000566082 CUL9Q8IWT3 2517 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 CRYGBP07316 175 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 PIP4P1Q86T03 277 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 TIMM21Q9BVV7 248 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 KNCNA6PVL3 124 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 TOMM7Q9P0U1 55 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 KLK9Q9UKQ9 250 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 TRAV8-3A0A0A6YYJ7 113 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 E9PLD3 99 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 FOXI1Q12951 378 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 SPINK13Q1W4C9 94 aa8.12□□□□□ -1.11
USB1-212ENST00000566082 NTN5Q8WTR8 489 aaPredicted RBP8.12□□□□□ -1.11
USB1-212ENST00000566082 ZNF625Q96I27 306 aaPredicted RBP8.12□□□□□ -1.11
USB1-212ENST00000566082 TRAV26-1A0A087WT03 109 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 RBAKDNA6NC62 111 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 DNAL4O96015 105 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 RPL39P62891 51 aaKnown RBP8.11□□□□□ -1.11
USB1-212ENST00000566082 FSTL3O95633 263 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 LGALS1P09382 135 aaKnown RBP8.11□□□□□ -1.11
USB1-212ENST00000566082 SCGB1A1P11684 91 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 UCNP55089 124 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 UFSP1Q6NVU6 142 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 RNF185Q96GF1 192 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 LINC01587Q99440 93 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 TM2D2Q9BX73 214 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 SPANXB1Q9NS25 103 aaPredicted RBP8.11□□□□□ -1.11
USB1-212ENST00000566082 FAM223BA6NKX1 122 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 FAM223AQ8IWN6 122 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 Q8N9W7 124 aa8.11□□□□□ -1.11
USB1-212ENST00000566082 ITLN2Q8WWU7 325 aaPredicted RBP8.11□□□□□ -1.11
USB1-212ENST00000566082 DAZ1Q9NQZ3 744 aaKnown RBP8.11□□□□□ -1.11
USB1-212ENST00000566082 A0A096LNJ9 63 aa8.1□□□□□ -1.11
USB1-212ENST00000566082 RNASE13Q5GAN3 156 aaKnown RBP8.1□□□□□ -1.11
USB1-212ENST00000566082 BAALCQ8WXS3 180 aa8.1□□□□□ -1.11
USB1-212ENST00000566082 U3KQK5 164 aa8.1□□□□□ -1.11
USB1-212ENST00000566082 UBE2L6O14933 153 aa8.1□□□□□ -1.11
USB1-212ENST00000566082 TMEM141Q96I45 108 aa8.1□□□□□ -1.11
USB1-212ENST00000566082 OR13C6PQ8NH95 151 aa8.1□□□□□ -1.11
USB1-212ENST00000566082 PHLDA1Q8WV24 401 aaPredicted RBP8.1□□□□□ -1.11
USB1-212ENST00000566082 C11orf86A6NJI1 115 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 B5MCH6 92 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 ZFP2Q6ZN57 461 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 ZFHX4Q86UP3 3567 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 AGRNO00468 2067 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 A4D1N5 150 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 HOXB4P17483 251 aaPredicted RBP8.09□□□□□ -1.11
USB1-212ENST00000566082 TEN1Q86WV5 123 aa8.09□□□□□ -1.11
USB1-212ENST00000566082 RNASE1P07998 156 aaKnown RBP8.08□□□□□ -1.12
USB1-212ENST00000566082 USMG5Q96IX5 58 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 CCL19Q99731 98 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 TRGV11A0A075B6L2 103 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 IGF1P05019 195 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 CFC1BP0CG36 223 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 CFC1P0CG37 223 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 INSL3P51460 131 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 TRPT1Q86TN4 253 aaKnown RBP8.08□□□□□ -1.12
USB1-212ENST00000566082 LY6G5BQ8NDX9 201 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 YAE1D1Q9NRH1 226 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 SMAD5-AS1Q9Y6J3 95 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 TRAV12-1A0A0B4J245 112 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 H3BMM0 161 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 UBE2WQ96B02 151 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 JPT2Q9H910 190 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 SS18L2Q9UHA2 77 aa8.08□□□□□ -1.12
USB1-212ENST00000566082 NDUFA4O00483 81 aa8.07□□□□□ -1.12
USB1-212ENST00000566082 LY6DQ14210 128 aa8.07□□□□□ -1.12
USB1-212ENST00000566082 ANKRD29Q8N6D5 301 aa8.07□□□□□ -1.12
USB1-212ENST00000566082 GATD1Q8NB37 220 aa8.07□□□□□ -1.12
USB1-212ENST00000566082 TOMM6Q96B49 74 aa8.07□□□□□ -1.12
USB1-212ENST00000566082 TNRC6BQ9UPQ9 1833 aaKnown RBP8.07□□□□□ -1.12
USB1-212ENST00000566082 LINC01548A6NM66 108 aa8.07□□□□□ -1.12
USB1-212ENST00000566082 A0A0J9YXV3 536 aa8.06□□□□□ -1.12
USB1-212ENST00000566082 CENPVL3A0A0U1RRI6 287 aa8.06□□□□□ -1.12
USB1-212ENST00000566082 CRYBA4P53673 196 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 193 ms