RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SSBP4Q9BWG4 385 aaPredicted RBP14.76□□□□□ -0.05
CLN3-212ENST00000564574 SCRT2Q9NQ03 307 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 DKK2Q9UBU2 259 aa14.76□□□□□ -0.05
CLN3-212ENST00000564574 M0R2P5 195 aa14.75□□□□□ -0.05
CLN3-212ENST00000564574 GZMBP10144 247 aa14.75□□□□□ -0.05
CLN3-212ENST00000564574 FAM222AQ5U5X8 452 aa14.75□□□□□ -0.05
CLN3-212ENST00000564574 FER1L6-AS1Q8NA97 138 aa14.75□□□□□ -0.05
CLN3-212ENST00000564574 CLRN3Q8NCR9 226 aa14.75□□□□□ -0.05
CLN3-212ENST00000564574 NDUFAF3Q9BU61 184 aa14.75□□□□□ -0.05
CLN3-212ENST00000564574 F2Z2F3 143 aa14.74□□□□□ -0.05
CLN3-212ENST00000564574 SNAPINO95295 136 aa14.74□□□□□ -0.05
CLN3-212ENST00000564574 FOXA3P55318 350 aaPredicted RBP14.74□□□□□ -0.05
CLN3-212ENST00000564574 RHEBQ15382 184 aa14.74□□□□□ -0.05
CLN3-212ENST00000564574 CTDSP1Q9GZU7 261 aa14.74□□□□□ -0.05
CLN3-212ENST00000564574 PHLDA3Q9Y5J5 127 aa14.74□□□□□ -0.05
CLN3-212ENST00000564574 MUC4Q99102 2169 aa14.74□□□□□ -0.05
CLN3-212ENST00000564574 TENM3Q9P273 2699 aa14.73□□□□□ -0.05
CLN3-212ENST00000564574 CXorf65A6NEN9 183 aa14.73□□□□□ -0.05
CLN3-212ENST00000564574 PIK3CD-AS1Q5SR53 167 aa14.73□□□□□ -0.05
CLN3-212ENST00000564574 LINC00612Q8N6U2 182 aa14.73□□□□□ -0.05
CLN3-212ENST00000564574 TRGV1A0A0A0MS02 117 aa14.72□□□□□ -0.05
CLN3-212ENST00000564574 ZFP82Q8N141 532 aa14.72□□□□□ -0.05
CLN3-212ENST00000564574 SYT8Q8NBV8 401 aa14.72□□□□□ -0.05
CLN3-212ENST00000564574 RASL10AQ92737 203 aa14.72□□□□□ -0.05
CLN3-212ENST00000564574 EDA2RQ9HAV5 297 aa14.72□□□□□ -0.05
CLN3-212ENST00000564574 CELA1Q9UNI1 258 aa14.72□□□□□ -0.05
CLN3-212ENST00000564574 CTRLP40313 264 aa14.71□□□□□ -0.05
CLN3-212ENST00000564574 CACNG7P62955 275 aa14.71□□□□□ -0.05
CLN3-212ENST00000564574 WDR73Q6P4I2 378 aa14.71□□□□□ -0.05
CLN3-212ENST00000564574 GTSF1Q8WW33 167 aa14.71□□□□□ -0.05
CLN3-212ENST00000564574 TPPP3Q9BW30 176 aa14.71□□□□□ -0.05
CLN3-212ENST00000564574 MRPL16Q9NX20 251 aaKnown RBP14.71□□□□□ -0.05
CLN3-212ENST00000564574 A0A087WWC5 75 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 SMIM27A0A1W2PRY6 76 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 C7orf77A4D0Y5 90 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 ZNF876PQ49A33 203 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 LYZL1Q6UWQ5 148 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 Q6ZTI0 123 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 C11orf45Q8TAV5 145 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 C18orf15Q96N68 181 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 TMEM242Q9NWH2 141 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 NAT8BQ9UHF3 227 aa14.7□□□□□ -0.06
CLN3-212ENST00000564574 HIGD1CA8MV81 97 aa14.69□□□□□ -0.06
CLN3-212ENST00000564574 NXPH4O95158 308 aa14.69□□□□□ -0.06
CLN3-212ENST00000564574 DAD1P61803 113 aa14.69□□□□□ -0.06
CLN3-212ENST00000564574 SPANXN1Q5VSR9 72 aa14.69□□□□□ -0.06
CLN3-212ENST00000564574 OR10AG1Q8NH19 301 aa14.69□□□□□ -0.06
CLN3-212ENST00000564574 CNFNQ9BYD5 112 aa14.69□□□□□ -0.06
CLN3-212ENST00000564574 GAGE12BA1L429 117 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 GAGE7O76087 117 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 GAGE12FP0CL80 117 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 GAGE12GP0CL81 117 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 GAGE12IP0CL82 117 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 BORCS7Q96B45 105 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 IMMP2LQ96T52 175 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 RPS10P5Q9NQ39 176 aa14.68□□□□□ -0.06
CLN3-212ENST00000564574 IGHV4-4A0A075B6R2 117 aa14.67□□□□□ -0.06
CLN3-212ENST00000564574 M0R381 172 aa14.67□□□□□ -0.06
CLN3-212ENST00000564574 DEFB130BP0DP73 79 aa14.67□□□□□ -0.06
CLN3-212ENST00000564574 DEFB130AP0DP74 79 aa14.67□□□□□ -0.06
CLN3-212ENST00000564574 PGLYRP4Q96LB8 373 aa14.67□□□□□ -0.06
CLN3-212ENST00000564574 TRGV2A0A075B6R0 118 aa14.66□□□□□ -0.06
CLN3-212ENST00000564574 C12orf74Q32Q52 190 aa14.66□□□□□ -0.06
CLN3-212ENST00000564574 DMRTA1Q5VZB9 504 aa14.66□□□□□ -0.06
CLN3-212ENST00000564574 NUP35Q8NFH5 326 aa14.66□□□□□ -0.06
CLN3-212ENST00000564574 COL7A1Q02388 2944 aa14.65□□□□□ -0.06
CLN3-212ENST00000564574 A8MWV9 139 aa14.65□□□□□ -0.06
CLN3-212ENST00000564574 TRAV4A0A0B4J268 109 aa14.64□□□□□ -0.07
CLN3-212ENST00000564574 A0A1B0GUT8 65 aa14.64□□□□□ -0.07
CLN3-212ENST00000564574 RS1O15537 224 aa14.64□□□□□ -0.07
CLN3-212ENST00000564574 CIDEAO60543 219 aa14.64□□□□□ -0.07
CLN3-212ENST00000564574 NANOS2P60321 138 aaKnown RBP14.64□□□□□ -0.07
CLN3-212ENST00000564574 KCNIP4Q6PIL6 250 aa14.64□□□□□ -0.07
CLN3-212ENST00000564574 MUC21A0A0G2JKD1 596 aa14.63□□□□□ -0.07
CLN3-212ENST00000564574 MUC21A0A140T8X8 626 aa14.63□□□□□ -0.07
CLN3-212ENST00000564574 ATP5G1P05496 136 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 TRGC1P0CF51 173 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 NTF3P20783 257 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 RIGQ13278 110 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 OR4C5Q8NGB2 326 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 AP1S3Q96PC3 154 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 NACAE9PAV3 2078 aa14.62□□□□□ -0.07
CLN3-212ENST00000564574 TRAV9-1A0A075B6T8 112 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 A0A1B0GW15 77 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 S100PP25815 95 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 SSTP61278 116 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 TWIST1Q15672 202 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 CFAP126Q5VTH2 177 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 Q6ZTC4 211 aa14.61□□□□□ -0.07
CLN3-212ENST00000564574 RHODO00212 210 aa14.6□□□□□ -0.07
CLN3-212ENST00000564574 S100A1P23297 94 aa14.6□□□□□ -0.07
CLN3-212ENST00000564574 FAM3BP58499 235 aaPredicted RBP14.6□□□□□ -0.07
CLN3-212ENST00000564574 ZFP2Q6ZN57 461 aa14.6□□□□□ -0.07
CLN3-212ENST00000564574 POM121L12Q8N7R1 296 aa14.6□□□□□ -0.07
CLN3-212ENST00000564574 ATP6V1G1O75348 118 aa14.59□□□□□ -0.07
CLN3-212ENST00000564574 ATRAIDQ6UW56 229 aa14.59□□□□□ -0.07
CLN3-212ENST00000564574 SMIM15Q7Z3B0 74 aa14.59□□□□□ -0.07
CLN3-212ENST00000564574 ATP5L2Q7Z4Y8 100 aa14.59□□□□□ -0.07
CLN3-212ENST00000564574 BTF3L4Q96K17 158 aa14.59□□□□□ -0.07
CLN3-212ENST00000564574 JPT2Q9H910 190 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms