RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 SPRY2O43597 315 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 HTN1P15515 57 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 RIGQ13278 110 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 COX19Q49B96 90 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 TMEM136Q6ZRR5 245 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 GATD1Q8NB37 220 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 C11orf72Q8NBR9 251 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 BORCS7Q96B45 105 aa9.83□□□□□ -0.84
VPS39-206ENST00000562662 TIMM8BQ9Y5J9 83 aaPredicted RBP9.83□□□□□ -0.84
VPS39-206ENST00000562662 A0A1B0GW15 77 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 SNURFLB1AK76 121 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 AZU1P20160 251 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 NTF3P20783 257 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 CAMPP49913 170 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 CACNG7P62955 275 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 GNB1LQ9BYB4 327 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 MSRB1Q9NZV6 116 aa9.82□□□□□ -0.84
VPS39-206ENST00000562662 UBE2CO00762 179 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 PHOX2AO14813 284 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 NXPH4O95158 308 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 SSTP61278 116 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 ZNF415Q09FC8 603 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 IL17DQ8TAD2 202 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 PHLDA3Q9Y5J5 127 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 NBEAL2Q6ZNJ1 2754 aa9.81□□□□□ -0.84
VPS39-206ENST00000562662 NACAE9PAV3 2078 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 MT-ND6P03923 174 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 TRGC2P03986 189 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 TWIST1Q15672 202 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 SPANXN1Q5VSR9 72 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 ZNF493Q6ZR52 646 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 RNASE8Q8TDE3 154 aaKnown RBP9.8□□□□□ -0.84
VPS39-206ENST00000562662 TMEM263Q8WUH6 116 aaKnown RBP9.8□□□□□ -0.84
VPS39-206ENST00000562662 TRAPPC1Q9Y5R8 145 aa9.8□□□□□ -0.84
VPS39-206ENST00000562662 K7EIL1 84 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 M0R381 172 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 HLA-DQA1P01909 254 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 PRB2P02812 416 aaPredicted RBP9.79□□□□□ -0.84
VPS39-206ENST00000562662 S100A8P05109 93 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 RAB4BP61018 213 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 DEFB135Q30KP9 77 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 DMRTA1Q5VZB9 504 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 ZFP82Q8N141 532 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 MRPL18Q9H0U6 180 aaKnown RBP9.79□□□□□ -0.84
VPS39-206ENST00000562662 GSN-AS1Q9NRJ2 163 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 X6R8D5 127 aa9.79□□□□□ -0.84
VPS39-206ENST00000562662 PLAC8L1A1L4L8 177 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 FABP9Q0Z7S8 132 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 SLAQ13239 276 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 RRN3P1Q2M238 152 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 C16orf74Q96GX8 76 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 RCHY1Q96PM5 261 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 SPXQ9BT56 116 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 TMEM191AQ9H0A3 160 aa9.78□□□□□ -0.84
VPS39-206ENST00000562662 Q6ZWC4 215 aa9.77□□□□□ -0.85
VPS39-206ENST00000562662 FRZBQ92765 325 aa9.77□□□□□ -0.85
VPS39-206ENST00000562662 PTH2Q96A98 100 aa9.77□□□□□ -0.85
VPS39-206ENST00000562662 RNF183Q96D59 192 aa9.77□□□□□ -0.85
VPS39-206ENST00000562662 SMIM9A6NGZ8 99 aa9.76□□□□□ -0.85
VPS39-206ENST00000562662 C1orf196B1AJZ1 125 aa9.76□□□□□ -0.85
VPS39-206ENST00000562662 M0R2P5 195 aa9.76□□□□□ -0.85
VPS39-206ENST00000562662 TRGC1P0CF51 173 aa9.76□□□□□ -0.85
VPS39-206ENST00000562662 SYT8Q8NBV8 401 aa9.76□□□□□ -0.85
VPS39-206ENST00000562662 APCSP02743 223 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 EVI2AP22794 236 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 ZNF876PQ49A33 203 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 PIK3CD-AS1Q5SR53 167 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 FAM104BQ5XKR9 115 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 AMN1Q8IY45 258 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 RNF185Q96GF1 192 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 AP1S3Q96PC3 154 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 JPT2Q9H910 190 aa9.75□□□□□ -0.85
VPS39-206ENST00000562662 HUWE1Q7Z6Z7 4374 aaKnown RBP9.75□□□□□ -0.85
VPS39-206ENST00000562662 DNAH9Q9NYC9 4486 aa9.74□□□□□ -0.85
VPS39-206ENST00000562662 DAZ2Q13117 558 aaKnown RBP9.74□□□□□ -0.85
VPS39-206ENST00000562662 KIAA1644Q3SXP7 199 aa9.74□□□□□ -0.85
VPS39-206ENST00000562662 OR11H2Q8NH07 326 aa9.74□□□□□ -0.85
VPS39-206ENST00000562662 OVOL2Q9BRP0 275 aa9.74□□□□□ -0.85
VPS39-206ENST00000562662 MRPL16Q9NX20 251 aaKnown RBP9.74□□□□□ -0.85
VPS39-206ENST00000562662 KIF25-AS1Q9Y6Z4 181 aa9.74□□□□□ -0.85
VPS39-206ENST00000562662 RAB4AP20338 218 aa9.73□□□□□ -0.85
VPS39-206ENST00000562662 RAB5BP61020 215 aa9.73□□□□□ -0.85
VPS39-206ENST00000562662 MRPL51Q4U2R6 128 aaKnown RBP9.73□□□□□ -0.85
VPS39-206ENST00000562662 SMIM15Q7Z3B0 74 aa9.73□□□□□ -0.85
VPS39-206ENST00000562662 C14orf178Q8N769 122 aaPredicted RBP9.73□□□□□ -0.85
VPS39-206ENST00000562662 RASL10AQ92737 203 aa9.73□□□□□ -0.85
VPS39-206ENST00000562662 DPH3P1Q9H4G8 78 aa9.73□□□□□ -0.85
VPS39-206ENST00000562662 TP53TG1Q9Y2A0 90 aa9.73□□□□□ -0.85
VPS39-206ENST00000562662 TMA7Q9Y2S6 64 aaKnown RBP9.73□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BKO60814 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BJP06899 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BOP23527 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BBP33778 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BDP58876 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 LINC00315P59091 139 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST1H2BCP62807 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST2H2BEQ16778 126 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.72□□□□□ -0.85
VPS39-206ENST00000562662 POM121L12Q8N7R1 296 aa9.72□□□□□ -0.85
VPS39-206ENST00000562662 Q8NAQ8 132 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms