RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 F11RQ9Y624 299 aaKnown RBP2.44□□□□□ -2.02
VPS35-203ENST00000562420 PRRC2AP48634 2157 aaKnown RBP2.44□□□□□ -2.02
VPS35-203ENST00000562420 NOTCH2Q04721 2471 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 DOCK3Q8IZD9 2030 aa2.44□□□□□ -2.02
VPS35-203ENST00000562420 ANAPC1Q9H1A4 1944 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 TRAV8-3A0A0A6YYJ7 113 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 LOC100131303A0A0U1RQF7 123 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 A0A1B0GUT8 65 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 HIGD1CA8MV81 97 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 IBA57-AS1B1ANH7 110 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 C19orf84I3L1E1 186 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 SS18L1O75177 396 aaPredicted RBP2.43□□□□□ -2.02
VPS35-203ENST00000562420 PPP1R17O96001 155 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 IGKV1D-33P01593 117 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 IGKV1-33P01594 117 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 BGLAPP02818 100 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 ZNF823P16415 610 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 S100A4P26447 101 aaKnown RBP2.43□□□□□ -2.02
VPS35-203ENST00000562420 EFNA4P52798 201 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 FHL5Q5TD97 284 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 FAM222AQ5U5X8 452 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 Q6JHZ5 121 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 C2orf82Q6UX34 121 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 ZFP2Q6ZN57 461 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 PCP2Q8IVA1 136 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 Q8N8P6 123 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 SLC25A29Q8N8R3 303 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 TOMM6Q96B49 74 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 ZC2HC1AQ96GY0 325 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 TMEM243Q9BU79 118 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 DHRS4-AS1Q9P1J3 65 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 TAC3Q9UHF0 121 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 LHFPL6Q9Y693 200 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 COL4A4P53420 1690 aaPredicted RBP2.43□□□□□ -2.02
VPS35-203ENST00000562420 OBSL1O75147 1896 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 MYO16Q9Y6X6 1858 aa2.43□□□□□ -2.02
VPS35-203ENST00000562420 NUP214P35658 2090 aaPredicted RBP2.42□□□□□ -2.02
VPS35-203ENST00000562420 DOCK9Q9BZ29 2069 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 TRAV7A0A075B6U4 112 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 H0Y9J4 135 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 H3BVH4 76 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 COX7A2P2O60397 106 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 OXTP01178 125 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 IGLV2-8P01709 118 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 CCKP06307 115 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 ARL14EPLP0DKL9 152 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 MYCNOSP40205 109 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 MP68P56378 58 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 LYZP61626 148 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 CXCL6P80162 114 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 NSUN5P1Q3KNT7 163 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 SP6Q3SY56 376 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 ASB16-AS1Q495Z4 193 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 IGFL2Q6UWQ7 119 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 ZNF826PQ6ZT77 177 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 VN1R4Q7Z5H5 301 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 LINC00596Q86U02 117 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 ORMDL3Q8N138 153 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 CD177Q8N6Q3 437 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 TMEM75Q8N9X5 138 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 ZNF799Q96GE5 643 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 RPP21Q9H633 154 aaKnown RBP2.42□□□□□ -2.02
VPS35-203ENST00000562420 MRPL35Q9NZE8 188 aaKnown RBP2.42□□□□□ -2.02
VPS35-203ENST00000562420 LCTP09848 1927 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 GREB1Q4ZG55 1949 aa2.42□□□□□ -2.02
VPS35-203ENST00000562420 NUP210Q8TEM1 1887 aaPredicted RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 NUMA1Q14980 2115 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 TRPM6Q9BX84 2022 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 PLXNB2O15031 1838 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 IGHV3OR16-13A0A075B7E8 117 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 TRBV7-1A0A0A6YYK4 115 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 TRAV13-2A0A0B4J235 113 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 A0A0D9SEW6 157 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 RBMY1BA6NDE4 496 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 RBMY1EA6NEQ0 496 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 LTAP01374 205 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 GIG44P09565 113 aaPredicted RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 RBMY1DP0C7P1 496 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 RBMY1A1P0DJD3 496 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 RBMY1CP0DJD4 496 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 RBMY1FQ15415 496 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 KISS1Q15726 138 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 Q1T7F1 81 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 MRPL51Q4U2R6 128 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 ORMDL2Q53FV1 153 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 SPANXN5Q5MJ07 72 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 LCE3EQ5T5B0 92 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 ATP11AUNQ6ZP68 121 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 WDR86Q86TI4 376 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 PFN4Q8NHR9 129 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 SPTSSAQ969W0 71 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 ZNF714Q96N38 554 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 DSCR8Q96T75 97 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 SLC50A1Q9BRV3 221 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 TIMM21Q9BVV7 248 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 TDRD6O60522 2096 aaKnown RBP2.41□□□□□ -2.02
VPS35-203ENST00000562420 PLXNA1Q9UIW2 1896 aa2.41□□□□□ -2.02
VPS35-203ENST00000562420 IGLV1-36A0A0B4J1U3 117 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 A0A0J9YX75 114 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 F8VRH5 84 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms