RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CRLF1O75462 422 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 TNFRSF6BO95407 300 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 LINC00310P59036 64 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 DEFA6Q01524 100 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 CD300EQ496F6 205 aaPredicted RBP5.6□□□□□ -1.51
VPS39-204ENST00000561818 Q6ZWC4 215 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 KIR2DL5AQ8N109 375 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 C9orf85Q96MD7 179 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 KIR2DL4Q99706 377 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 CITED2Q99967 270 aaPredicted RBP5.6□□□□□ -1.51
VPS39-204ENST00000561818 MAP6D1Q9H9H5 199 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 ST20Q9HBF5 79 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 TLN2Q9Y4G6 2542 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 MAP1AP78559 2803 aaPredicted RBP5.59□□□□□ -1.51
VPS39-204ENST00000561818 IGHV3-16A0A0C4DH30 117 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 CBY3A6NI87 242 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 SYS1-DBNDD2H3BUS1 97 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 SAP30O75446 220 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 IGLV1-51P01701 117 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 NPSP0C0P6 89 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 FRMD6-AS1P0C7T7 363 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 CD28P10747 220 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 FCER1GP30273 86 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 SUMO2P61956 95 aaKnown RBP5.59□□□□□ -1.51
VPS39-204ENST00000561818 SMAGPQ0VAQ4 97 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 LAGE3Q14657 143 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 DEFB136Q30KP8 78 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 PAPPA-AS1Q5QFB9 102 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 C9orf66Q5T8R8 295 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 HIST2H2BCQ6DN03 193 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 AMTNQ6UX39 209 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 GTSCR1Q86UQ5 136 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 LURAP1LQ8IV03 231 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 RNF185Q96GF1 192 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 PMCHL2Q9BQD1 86 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 ZNF256Q9Y2P7 627 aaPredicted RBP5.59□□□□□ -1.51
VPS39-204ENST00000561818 GOLT1BQ9Y3E0 138 aa5.59□□□□□ -1.51
VPS39-204ENST00000561818 ZANQ9Y493 2812 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 TRAV9-2A0A087WT02 112 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 TRAV12-3A0A0B4J271 114 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 TRBV6-5A0A0K0K1A5 114 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 F6UB75 175 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 M0R2P5 195 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 C3orf79P0CE67 100 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 RNASE3P12724 160 aaKnown RBP5.58□□□□□ -1.52
VPS39-204ENST00000561818 EVI2AP22794 236 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 DDTP30046 118 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 KIR3DS1Q14943 382 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 LGALS9BQ3B8N2 356 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 PRR9Q5T870 116 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 LGALS9CQ6DKI2 356 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 TRPT1Q86TN4 253 aaKnown RBP5.58□□□□□ -1.52
VPS39-204ENST00000561818 SMIM2Q9BVW6 85 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 C11orf21Q9P2W6 132 aa5.58□□□□□ -1.52
VPS39-204ENST00000561818 MXRA5Q9NR99 2828 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 PCP4L1A6NKN8 68 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 VCYO14598 125 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 NPYP01303 97 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 IFI27P40305 119 aaPredicted RBP5.57□□□□□ -1.52
VPS39-204ENST00000561818 RHOHQ15669 191 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 SPINK13Q1W4C9 94 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 MUC21Q5SSG8 566 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 ADAMTSL5Q6ZMM2 481 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 ZFP2Q6ZN57 461 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 ZNF705AQ6ZN79 300 aaPredicted RBP5.57□□□□□ -1.52
VPS39-204ENST00000561818 DNAJC30Q96LL9 226 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 DUX3Q96PT4 197 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 TMEM208Q9BTX3 173 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 ZNF747Q9BV97 191 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 UQCR10Q9UDW1 63 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 PDZD2O15018 2839 aa5.57□□□□□ -1.52
VPS39-204ENST00000561818 ITPR2Q14571 2701 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 J3KRW8 73 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 NUPR1O60356 82 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 PLNP26678 52 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 BEAN1Q3B7T3 259 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 ZNF876PQ49A33 203 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 LINC01545Q5VT33 79 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 ZNF575Q86XF7 245 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 Q8N1Y9 231 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 FAM19A2Q8N3H0 131 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 IFI27L1Q96BM0 104 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 MIEN1Q9BRT3 115 aa5.56□□□□□ -1.52
VPS39-204ENST00000561818 FASNP49327 2511 aaKnown RBP5.56□□□□□ -1.52
VPS39-204ENST00000561818 GCN1Q92616 2671 aaKnown RBP5.56□□□□□ -1.52
VPS39-204ENST00000561818 SONP18583 2426 aaKnown RBP5.56□□□□□ -1.52
VPS39-204ENST00000561818 TRAV12-1A0A0B4J245 112 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 A0A1W2PRX2 142 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 INAFM1C9JVW0 142 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.55□□□□□ -1.52
VPS39-204ENST00000561818 NUDT3O95989 172 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 MGPP08493 103 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 CD33P20138 364 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 CRYBA4P53673 196 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 ODF3L2Q3SX64 289 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 ZNF664Q8N3J9 261 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 NRACQ8N912 160 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 TMEM263Q8WUH6 116 aaKnown RBP5.55□□□□□ -1.52
VPS39-204ENST00000561818 C16orf74Q96GX8 76 aa5.55□□□□□ -1.52
VPS39-204ENST00000561818 LINC01587Q99440 93 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms