RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 LINC00476Q8WZB0 136 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 MRPL20Q9BYC9 149 aaKnown RBP5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 PRO0628Q9UI54 55 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 TET2Q6N021 2002 aaPredicted RBP5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 IGHV3-43A0A0B4J1X8 118 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 DEFB108AA8MXU0 73 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 LGALS9O00182 355 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 IGLV2-11P01706 119 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 IGHV3-43DP0DP04 118 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 TMEM155Q4W5P6 130 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 SUMO4Q6EEV6 95 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 MYOZ3Q8TDC0 251 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 TTTY12Q9BZ98 90 aa5.08□□□□□ -1.6
TSPAN3-209ENST00000560715 CACNA1DQ01668 2161 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM236DA0A1B0GTK5 79 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 RBAKDNA6NC62 111 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM236CP0DP71 79 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 MED14OSP0DP75 135 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 PRCDQ00LT1 54 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 EBI3Q14213 229 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 LINC00305Q7Z4B0 112 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 POM121L12Q8N7R1 296 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 Q9H3A6 140 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 KLK5Q9Y337 293 aaPredicted RBP5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 RPL18AQ02543 176 aaKnown RBP5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 PRNTQ86SH4 94 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 TRPT1Q86TN4 253 aaKnown RBP5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 IMUPQ9GZP8 106 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 NXT2Q9NPJ8 142 aaKnown RBP5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 CACNA1HO95180 2353 aa5.07□□□□□ -1.6
TSPAN3-209ENST00000560715 PTPRBP23467 1997 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM236AA0A1B0GUQ0 79 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM236BA0A1B0GV22 79 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 K7EM74 188 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 K7EQD1 137 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 MRPL33O75394 65 aaKnown RBP5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 CRIP2P52943 208 aaPredicted RBP5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 C6orf223Q8N319 242 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 TMEM190Q8WZ59 177 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 TEX49A0A1B0GTD5 131 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 NDUFA3O95167 84 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 RNASE2P10153 161 aaKnown RBP5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 WT1P19544 449 aaPredicted RBP5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 EFNA4P52798 201 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 ZNF56Q15929 161 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 LYZL1Q6UWQ5 148 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 IGFL2Q6UWQ7 119 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 PCNX2A6NKB5 2137 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 ATP5G1P05496 136 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 HLA-DMBP28068 263 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 RPL39P5Q59GN2 51 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 ZCCHC24Q8N2G6 241 aaKnown RBP5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM19A4Q96LR4 140 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 RTL8AQ9BWD3 113 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 OTORQ9NRC9 128 aa5.06□□□□□ -1.6
TSPAN3-209ENST00000560715 CRYGDP07320 174 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 CFC1BP0CG36 223 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 CFC1P0CG37 223 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 PMVKQ15126 192 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 WDR86Q86TI4 376 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 CHCHD10Q8WYQ3 142 aaPredicted RBP5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 PRORYQ9H606 182 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 SPRR3Q9UBC9 169 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 FREM2Q5SZK8 3169 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 IGKV1D-37A0A075B6S9 117 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 H3BMM0 161 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 IGHV4-39P01824 125 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 IGHV4-38-2P0DP08 117 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 CRYGAP11844 174 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 GOLT1AQ6ZVE7 132 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 UBE2WQ96B02 151 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 MED13Q9UHV7 2174 aa5.05□□□□□ -1.6
TSPAN3-209ENST00000560715 ZFHX2Q9C0A1 2572 aaPredicted RBP5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 F8VRH5 84 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 CRIP1P50238 77 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 RBMY1FQ15415 496 aaKnown RBP5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 ZNF71Q9NQZ8 489 aaPredicted RBP5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 PRO1854Q9UHT4 67 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 SMIM26A0A096LP01 95 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 TRAV12-1A0A0B4J245 112 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 TRBV10-2A0A0K0K1G8 114 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 ZNF815PA8K554 130 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 P0DMU3 169 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM231AP0DMU4 169 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 FAM231CP0DMU5 169 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 EDDM3AQ14507 147 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 Q5XG85 94 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 HRCT1Q6UXD1 115 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 SCGB1D4Q6XE38 83 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 Q6ZRP5 223 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 TMEM75Q8N9X5 138 aa5.04□□□□□ -1.6
TSPAN3-209ENST00000560715 UPK2O00526 184 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 COX7CP15954 63 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 ATXN8Q156A1 80 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 CEMP1Q6PRD7 247 aaPredicted RBP5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 MDP1Q86V88 176 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 Q8N8P6 123 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 DEFB124Q8NES8 71 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 PLEKHB2Q96CS7 222 aa5.03□□□□□ -1.6
TSPAN3-209ENST00000560715 DPH3Q96FX2 82 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms