RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RNASE3P12724 160 aaKnown RBP12.29□□□□□ -0.44
SHMT2-231ENST00000557433 UCNP55089 124 aa12.29□□□□□ -0.44
SHMT2-231ENST00000557433 PMVKQ15126 192 aa12.29□□□□□ -0.44
SHMT2-231ENST00000557433 TRBV20-1A0A075B6N2 111 aa12.28□□□□□ -0.44
SHMT2-231ENST00000557433 VCYO14598 125 aa12.28□□□□□ -0.44
SHMT2-231ENST00000557433 RNASE4P34096 147 aaKnown RBP12.28□□□□□ -0.44
SHMT2-231ENST00000557433 UBE2D3P61077 147 aa12.28□□□□□ -0.44
SHMT2-231ENST00000557433 UBE2D2P62837 147 aa12.28□□□□□ -0.44
SHMT2-231ENST00000557433 KIF25-AS1Q9Y6Z4 181 aa12.28□□□□□ -0.44
SHMT2-231ENST00000557433 AGRNO00468 2067 aa12.28□□□□□ -0.44
SHMT2-231ENST00000557433 IGIPA6NJ69 53 aa12.27□□□□□ -0.44
SHMT2-231ENST00000557433 FOXC1Q12948 553 aa12.27□□□□□ -0.44
SHMT2-231ENST00000557433 TCTEX1D4Q5JR98 221 aa12.27□□□□□ -0.44
SHMT2-231ENST00000557433 KIR2DL4Q99706 377 aa12.27□□□□□ -0.44
SHMT2-231ENST00000557433 C11orf86A6NJI1 115 aa12.27□□□□□ -0.45
SHMT2-231ENST00000557433 CRYGDP07320 174 aa12.27□□□□□ -0.45
SHMT2-231ENST00000557433 CD7P09564 240 aa12.27□□□□□ -0.45
SHMT2-231ENST00000557433 POLR2KP53803 58 aaKnown RBP12.27□□□□□ -0.45
SHMT2-231ENST00000557433 FOXI1Q12951 378 aa12.27□□□□□ -0.45
SHMT2-231ENST00000557433 WNK2Q9Y3S1 2297 aa12.26□□□□□ -0.45
SHMT2-231ENST00000557433 IGLV4-69A0A075B6H9 119 aa12.26□□□□□ -0.45
SHMT2-231ENST00000557433 TSPAN13O95857 204 aa12.26□□□□□ -0.45
SHMT2-231ENST00000557433 LINC00315P59091 139 aa12.26□□□□□ -0.45
SHMT2-231ENST00000557433 UNQ9165/PRO28630Q6UXU0 137 aa12.26□□□□□ -0.45
SHMT2-231ENST00000557433 A0A0J9YY99 117 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 TRBV6-5A0A0K0K1A5 114 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 KLLNB2CW77 178 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 J3KRW8 73 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 DUSP14O95147 198 aaKnown RBP12.25□□□□□ -0.45
SHMT2-231ENST00000557433 ZFP2Q6ZN57 461 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 TP53TG1Q9Y2A0 90 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 SMG1Q96Q15 3661 aaKnown RBP12.25□□□□□ -0.45
SHMT2-231ENST00000557433 MGAQ8IWI9 3026 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 PLEKHB2Q96CS7 222 aa12.25□□□□□ -0.45
SHMT2-231ENST00000557433 GNRH2O43555 120 aa12.24□□□□□ -0.45
SHMT2-231ENST00000557433 ID1P41134 155 aa12.24□□□□□ -0.45
SHMT2-231ENST00000557433 FAM159AQ6UWV7 190 aa12.24□□□□□ -0.45
SHMT2-231ENST00000557433 NDUFA11Q86Y39 141 aa12.24□□□□□ -0.45
SHMT2-231ENST00000557433 ABCA4P78363 2273 aa12.24□□□□□ -0.45
SHMT2-231ENST00000557433 TSHBP01222 138 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 IGHV1-69P01742 117 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 MTURNQ8N3F0 131 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 SLC25A29Q8N8R3 303 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 BPESC1Q9GZL8 116 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 TRBV27A0A0K0K1C4 114 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 TMEM219Q86XT9 240 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 PPDPFLQ8WWR9 84 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 ODF3Q96PU9 254 aa12.23□□□□□ -0.45
SHMT2-231ENST00000557433 K7EMT4 169 aa12.22□□□□□ -0.45
SHMT2-231ENST00000557433 LGALS9O00182 355 aa12.22□□□□□ -0.45
SHMT2-231ENST00000557433 IGHG2P01859 326 aa12.22□□□□□ -0.45
SHMT2-231ENST00000557433 PSMB2P49721 201 aa12.22□□□□□ -0.45
SHMT2-231ENST00000557433 ZNF876PQ49A33 203 aa12.22□□□□□ -0.45
SHMT2-231ENST00000557433 SBSPONQ8IVN8 264 aa12.22□□□□□ -0.45
SHMT2-231ENST00000557433 LOC107984156A0A0G2JMH3 177 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 M0QXV9 152 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 SMCPP49901 116 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-231ENST00000557433 RPL11P62913 178 aaKnown RBP12.21□□□□□ -0.45
SHMT2-231ENST00000557433 RHOHQ15669 191 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 SUMO4Q6EEV6 95 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 ARL17AQ8IVW1 177 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 RHPN1-AS1Q9BWJ2 59 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 UBTD1Q9HAC8 227 aa12.21□□□□□ -0.45
SHMT2-231ENST00000557433 DAZ1Q9NQZ3 744 aaKnown RBP12.21□□□□□ -0.45
SHMT2-231ENST00000557433 A0A1W2PPR1 153 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 TRBV12-3P01733 135 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 IGHV3-30P01768 117 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 IGHV3-30-5P0DP03 117 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 NFE4Q86UQ8 179 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 TEN1Q86WV5 123 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 C10orf126Q8N4M7 172 aa12.21□□□□□ -0.46
SHMT2-231ENST00000557433 ADGRG4Q8IZF6 3080 aa12.2□□□□□ -0.46
SHMT2-231ENST00000557433 KLHL30-AS1Q8NEE0 82 aa12.2□□□□□ -0.46
SHMT2-231ENST00000557433 ZNF292O60281 2723 aa12.2□□□□□ -0.46
SHMT2-231ENST00000557433 BSNQ9UPA5 3926 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 ASPMQ8IZT6 3477 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 PIEZO2Q9H5I5 2752 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 SDHAF1A6NFY7 115 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 INSL3P51460 131 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 SYT8Q8NBV8 401 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 SPRY2O43597 315 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 NSUN5P1Q3KNT7 163 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 LINC00527Q9UJ94 153 aa12.19□□□□□ -0.46
SHMT2-231ENST00000557433 AKAP13Q12802 2813 aa12.18□□□□□ -0.46
SHMT2-231ENST00000557433 F6UB75 175 aa12.18□□□□□ -0.46
SHMT2-231ENST00000557433 LGALS3P17931 250 aaKnown RBP12.18□□□□□ -0.46
SHMT2-231ENST00000557433 TMEM170BQ5T4T1 132 aa12.18□□□□□ -0.46
SHMT2-231ENST00000557433 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
SHMT2-231ENST00000557433 ZNF580Q9UK33 172 aa12.18□□□□□ -0.46
SHMT2-231ENST00000557433 A8MWV9 139 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 J3QQQ9 107 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 CFC1BP0CG36 223 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 CFC1P0CG37 223 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 C9orf85Q96MD7 179 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 CDIP1Q9H305 208 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 F5H697 171 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 LEPROTO15243 131 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 CRYBA4P53673 196 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 CKS1BP61024 79 aa12.17□□□□□ -0.46
SHMT2-231ENST00000557433 A6NDX4 124 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms