RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 SAMD5Q5TGI4 173 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 OR9G4Q8NGQ1 327 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 STAB1Q9NY15 2570 aa4.44□□□□□ -1.7
SYNE2-225ENST00000557060 IGHV3-73A0A0B4J1V6 119 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 FBLL1A6NHQ2 334 aaKnown RBP4.43□□□□□ -1.7
SYNE2-225ENST00000557060 ESDP10768 282 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 CD300EQ496F6 205 aaPredicted RBP4.43□□□□□ -1.7
SYNE2-225ENST00000557060 TMEM70Q9BUB7 260 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 INAFM1C9JVW0 142 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 K7EMT4 169 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 ATP6V0BQ99437 205 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 MDFICQ9P1T7 246 aa4.43□□□□□ -1.7
SYNE2-225ENST00000557060 TNFRSF6BO95407 300 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 OR5AL1P0C617 328 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 LINC01006Q8NI28 216 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 RPL39LQ96EH5 51 aaKnown RBP4.42□□□□□ -1.7
SYNE2-225ENST00000557060 MRPL53Q96EL3 112 aaKnown RBP4.42□□□□□ -1.7
SYNE2-225ENST00000557060 RNF185Q96GF1 192 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 RAX2Q96IS3 184 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 MUC4Q99102 2169 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 OR4C46A6NHA9 309 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 K7EQG2 157 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 CCL24O00175 119 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 Q8N976 141 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 MAP1LC3CQ9BXW4 147 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 TMEM191AQ9H0A3 160 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 A0A1B0GW15 77 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 CBY3A6NI87 242 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 SYS1-DBNDD2H3BUS1 97 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 TCF21O43680 179 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 CD5LO43866 347 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 SAP30O75446 220 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 LY6G6DO95868 133 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 LEPP41159 167 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 Q8N1Y9 231 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 ZNF418Q8TF45 676 aaPredicted RBP4.42□□□□□ -1.7
SYNE2-225ENST00000557060 WFDC10AQ9H1F0 79 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 MAP1LC3AQ9H492 121 aa4.42□□□□□ -1.7
SYNE2-225ENST00000557060 A0A0J9YX75 114 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 BRI3O95415 125 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 RNASE3P12724 160 aaKnown RBP4.41□□□□□ -1.7
SYNE2-225ENST00000557060 CDKN1BP46527 198 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 Q6ZN92 141 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 ZNF493Q6ZR52 646 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 COX8CQ7Z4L0 72 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 C4orf3Q8WVX3 66 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 CHCHD1Q96BP2 118 aaKnown RBP4.41□□□□□ -1.7
SYNE2-225ENST00000557060 XCL2Q9UBD3 114 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 PEMTQ9UBM1 199 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 SMIM17P0DL12 118 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 CACNG7P62955 275 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 CTAG1AP78358 180 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 TEX43Q6ZNM6 134 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 ARL6IP6Q8N6S5 226 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 FOXC2Q99958 501 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 TMEM208Q9BTX3 173 aa4.41□□□□□ -1.7
SYNE2-225ENST00000557060 C7orf71A4D174 169 aa4.4□□□□□ -1.7
SYNE2-225ENST00000557060 GHRHP01286 108 aa4.4□□□□□ -1.7
SYNE2-225ENST00000557060 PRSS1P07477 247 aa4.4□□□□□ -1.7
SYNE2-225ENST00000557060 IGLL1P15814 213 aa4.4□□□□□ -1.7
SYNE2-225ENST00000557060 OR2K2Q8NGT1 345 aa4.4□□□□□ -1.7
SYNE2-225ENST00000557060 ZNF580Q9UK33 172 aa4.4□□□□□ -1.7
SYNE2-225ENST00000557060 A0A096LNJ9 63 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 STPG4Q8N801 248 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 MYOZ3Q8TDC0 251 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 HSPB8Q9UJY1 196 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 BAHCC1Q9P281 2608 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 COL6A5A8TX70 2615 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 NOTCH1P46531 2555 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 A0A1B0GV90 55 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 TMEM89A2RUT3 159 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 ZNF56Q15929 161 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 ZNF876PQ49A33 203 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 TMEM158Q8WZ71 300 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 NDUFAF3Q9BU61 184 aa4.4□□□□□ -1.71
SYNE2-225ENST00000557060 ZNF256Q9Y2P7 627 aaPredicted RBP4.4□□□□□ -1.71
SYNE2-225ENST00000557060 TRRAPQ9Y4A5 3859 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 C20orf202A1L168 122 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 KLLNB2CW77 178 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 LGALS9O00182 355 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 NUDT3O95989 172 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 RBMY1A1P0DJD3 496 aaKnown RBP4.39□□□□□ -1.71
SYNE2-225ENST00000557060 RBMY1CP0DJD4 496 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 RBMY1FQ15415 496 aaKnown RBP4.39□□□□□ -1.71
SYNE2-225ENST00000557060 Q8N2B8 174 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 ZNF747Q9BV97 191 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 HSBP1L1C9JCN9 74 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 HBDP02042 147 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 RPL35AP18077 110 aaKnown RBP4.39□□□□□ -1.71
SYNE2-225ENST00000557060 DEFB114Q30KQ6 69 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 AP1S3Q96PC3 154 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 LINC01587Q99440 93 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 CNFNQ9BYD5 112 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 LENEPQ9Y5L5 61 aa4.39□□□□□ -1.71
SYNE2-225ENST00000557060 FBN1P35555 2871 aaKnown RBP4.38□□□□□ -1.71
SYNE2-225ENST00000557060 GATD1Q8NB37 220 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 IFI27L1Q96BM0 104 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 SNHG12Q9BXW3 62 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 MAP6D1Q9H9H5 199 aa4.38□□□□□ -1.71
SYNE2-225ENST00000557060 DKK2Q9UBU2 259 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms