RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TMEM61Q8N0U2 210 aa9.52□□□□□ -0.89
VIPAS39-206ENST00000553888 OR10AG1Q8NH19 301 aa9.52□□□□□ -0.89
VIPAS39-206ENST00000553888 SAMD10Q9BYL1 202 aa9.52□□□□□ -0.89
VIPAS39-206ENST00000553888 C2CD3Q4AC94 2353 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 TRAV12-2A0A075B6T6 113 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 SMKR1H3BMG3 65 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 CSN3P07498 182 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 RPS20P60866 119 aaKnown RBP9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 RNASEKQ6P5S7 137 aaKnown RBP9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 MUC4Q99102 2169 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 H3BVH4 76 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 M0R2Z0 102 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 KCNS1Q96KK3 526 aa9.51□□□□□ -0.89
VIPAS39-206ENST00000553888 GAS8-AS1O95177 125 aa9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 ESDP10768 282 aa9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 GNRH2O43555 120 aa9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 AMTP48728 403 aa9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 SNRPD3P62318 126 aaKnown RBP9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 BATFQ16520 125 aa9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 ANXA2RQ3ZCQ2 193 aa9.5□□□□□ -0.89
VIPAS39-206ENST00000553888 KNCNA6PVL3 124 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 NCR2O95944 276 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 FXYD7P58549 80 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 JMJD1CQ15652 2540 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 A0A0J9YX75 114 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 D6R8Y8 96 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 CCL24O00175 119 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 NIT1Q86X76 327 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 C16orf95Q9H693 158 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 LENEPQ9Y5L5 61 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 TRAV12-3A0A0B4J271 114 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 JOSD1Q15040 202 aaPredicted RBP9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 ZNF493Q6ZR52 646 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 GATD1Q8NB37 220 aa9.49□□□□□ -0.89
VIPAS39-206ENST00000553888 CKS1BP61024 79 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 SPINK13Q1W4C9 94 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 CD300EQ496F6 205 aaPredicted RBP9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 MRPL51Q4U2R6 128 aaKnown RBP9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 DYNLRB2Q8TF09 96 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 PEMTQ9UBM1 199 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 TRAV21A0A0B4J279 112 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 ZNF324O75467 553 aaPredicted RBP9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 DEFB131AP59861 70 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 KRTAP10-3P60369 221 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 NSUN5P1Q3KNT7 163 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 FAM104BQ5XKR9 115 aa9.48□□□□□ -0.89
VIPAS39-206ENST00000553888 EVI2AP22794 236 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 DNLZQ5SXM8 178 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 OR4C5Q8NGB2 326 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 CST9LQ9H4G1 147 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 TENM1Q9UKZ4 2725 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 LOC389332A0A1B0GUA5 103 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 KLLNB2CW77 178 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 FHL3Q13643 280 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 DEFB114Q30KQ6 69 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 C1orf43Q9BWL3 253 aa9.47□□□□□ -0.89
VIPAS39-206ENST00000553888 GATA1P15976 413 aaPredicted RBP9.46□□□□□ -0.89
VIPAS39-206ENST00000553888 C5orf47Q569G3 176 aa9.46□□□□□ -0.89
VIPAS39-206ENST00000553888 APRG1Q8IVJ8 170 aa9.46□□□□□ -0.89
VIPAS39-206ENST00000553888 RNF185Q96GF1 192 aa9.46□□□□□ -0.89
VIPAS39-206ENST00000553888 CNFNQ9BYD5 112 aa9.46□□□□□ -0.89
VIPAS39-206ENST00000553888 F8P00451 2351 aa9.46□□□□□ -0.89
VIPAS39-206ENST00000553888 HSBP1O75506 76 aa9.46□□□□□ -0.9
VIPAS39-206ENST00000553888 SCGB1D1O95968 90 aa9.46□□□□□ -0.9
VIPAS39-206ENST00000553888 RPL32P62910 135 aaKnown RBP9.46□□□□□ -0.9
VIPAS39-206ENST00000553888 PAFAH1B2P68402 229 aa9.46□□□□□ -0.9
VIPAS39-206ENST00000553888 EBLN2Q6P2I7 272 aa9.46□□□□□ -0.9
VIPAS39-206ENST00000553888 VWFP04275 2813 aa9.46□□□□□ -0.9
VIPAS39-206ENST00000553888 ADARB2-AS1A8MUL3 147 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 M0R381 172 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 PROK1P58294 105 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 KRTDAPP60985 99 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 SPANXN1Q5VSR9 72 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 TRAV26-2A0A0B4J265 109 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 UBE2V1Q13404 147 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 LINC00173Q6ZV60 143 aa9.45□□□□□ -0.9
VIPAS39-206ENST00000553888 NOTCH3Q9UM47 2321 aa9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 RBMY1BA6NDE4 496 aaKnown RBP9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 RBMY1EA6NEQ0 496 aaKnown RBP9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 NPYP01303 97 aa9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 PRM2P04554 102 aa9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 RBMY1DP0C7P1 496 aaKnown RBP9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 RNASE3P12724 160 aaKnown RBP9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 S100A4P26447 101 aaKnown RBP9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 PRELID3AQ96N28 172 aa9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 TMEM191AQ9H0A3 160 aa9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 IFI27P40305 119 aaPredicted RBP9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 AMTNQ6UX39 209 aa9.44□□□□□ -0.9
VIPAS39-206ENST00000553888 IGHV1-24A0A0C4DH33 117 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 C7orf71A4D174 169 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 K7ERU9 68 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 OR5AL1P0C617 328 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 RBMY1A1P0DJD3 496 aaKnown RBP9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 RBMY1CP0DJD4 496 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 CKS2P33552 79 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 RBMY1FQ15415 496 aaKnown RBP9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 MAP6D1Q9H9H5 199 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 ASIPP42127 132 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 TDRG1Q3Y452 100 aa9.43□□□□□ -0.9
VIPAS39-206ENST00000553888 FOXI2Q6ZQN5 318 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms