RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 NIPBLQ6KC79 2804 aaeCLIP2.37□□□□□ -2.03
LIMA1-210ENST00000552045 CSMD1Q96PZ7 3565 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 SPTBN1Q01082 2364 aaKnown RBP2.37□□□□□ -2.03
LIMA1-210ENST00000552045 NBEAL2Q6ZNJ1 2754 aa2.37□□□□□ -2.03
LIMA1-210ENST00000552045 CRYBG3Q68DQ2 2970 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 TSC2P49815 1807 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 PRORSD1PA6NEY8 169 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 TSTD3H0UI37 97 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 H3BQV1 296 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 H7BYZ3 331 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 CST7O76096 145 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 NBEAP1P0C6P0 100 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 S100GP29377 79 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 HBBP68871 147 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 OR4K15Q8NH41 348 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 TMEM254Q8TBM7 123 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 THEM6Q8WUY1 208 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 CYSTM1Q9H1C7 97 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 CACNA1EQ15878 2313 aa2.36□□□□□ -2.03
LIMA1-210ENST00000552045 ZNF236Q9UL36 1845 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 NBASA2RRP1 2371 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 B4DSR2 109 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 IFNA4P05014 189 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 BCL2P10415 239 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 C1orf137Q5JT78 98 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 SAMD13Q5VXD3 122 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-210ENST00000552045 ANGPTL5Q86XS5 388 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 CLECL1Q8IZS7 167 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 OR5D16Q8NGK9 328 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 LAMTOR2Q9Y2Q5 125 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 PCLOQ9Y6V0 5065 aa2.35□□□□□ -2.03
LIMA1-210ENST00000552045 MGAQ8IWI9 3026 aa2.34□□□□□ -2.03
LIMA1-210ENST00000552045 UTP20O75691 2785 aaKnown RBP2.34□□□□□ -2.03
LIMA1-210ENST00000552045 C17orf112F2Z3M2 114 aa2.34□□□□□ -2.03
LIMA1-210ENST00000552045 RER1O15258 196 aa2.34□□□□□ -2.03
LIMA1-210ENST00000552045 OR10J4P0C629 311 aa2.34□□□□□ -2.03
LIMA1-210ENST00000552045 RPL35P42766 123 aaKnown RBP2.34□□□□□ -2.03
LIMA1-210ENST00000552045 POP5Q969H6 163 aaKnown RBP2.34□□□□□ -2.03
LIMA1-210ENST00000552045 CHCHD1Q96BP2 118 aaKnown RBP2.34□□□□□ -2.03
LIMA1-210ENST00000552045 LRTM1Q9HBL6 345 aa2.34□□□□□ -2.03
LIMA1-210ENST00000552045 NAT8BQ9UHF3 227 aa2.34□□□□□ -2.03
LIMA1-210ENST00000552045 CEP192Q8TEP8 1941 aa2.34□□□□□ -2.04
LIMA1-210ENST00000552045 CSPG4Q6UVK1 2322 aa2.34□□□□□ -2.04
LIMA1-210ENST00000552045 BIRC6Q9NR09 4857 aa2.34□□□□□ -2.04
LIMA1-210ENST00000552045 CENPEQ02224 2701 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 PKD1L1Q8TDX9 2849 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 ALPK2Q86TB3 2170 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 NUP210Q8TEM1 1887 aaPredicted RBP2.33□□□□□ -2.04
LIMA1-210ENST00000552045 AKAP9Q99996 3911 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 SORL1Q92673 2214 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 HYPMO75409 117 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 FAM107AO95990 144 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 S100A11P31949 105 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 KLRD1Q13241 179 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 SURF2Q15527 256 aaPredicted RBP2.33□□□□□ -2.04
LIMA1-210ENST00000552045 UNQ6190/PRO20217Q6UXQ8 127 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 OR5D14Q8NGL3 314 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 ZC2HC1AQ96GY0 325 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 CELSR2Q9HCU4 2923 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 CSMD2Q7Z408 3487 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 LAMA1P25391 3075 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 DOCK1Q14185 1865 aa2.33□□□□□ -2.04
LIMA1-210ENST00000552045 IGKV2D-26A0A0A0MRZ7 120 aa2.32□□□□□ -2.04
LIMA1-210ENST00000552045 TRBV6-8A0A0A6YYG3 113 aa2.32□□□□□ -2.04
LIMA1-210ENST00000552045 TCRBV4S1A1TA0A5B7 111 aa2.32□□□□□ -2.04
LIMA1-210ENST00000552045 GABARAPH6UMI1 98 aa2.32□□□□□ -2.04
LIMA1-210ENST00000552045 IGLV1-51P01701 117 aa2.32□□□□□ -2.04
LIMA1-210ENST00000552045 EIF3IQ13347 325 aaKnown RBP2.32□□□□□ -2.04
LIMA1-210ENST00000552045 ST6GALNAC3Q8NDV1 305 aa2.32□□□□□ -2.04
LIMA1-210ENST00000552045 SKA2Q8WVK7 121 aaPredicted RBP2.32□□□□□ -2.04
LIMA1-210ENST00000552045 CHCHD2Q9Y6H1 151 aaPredicted RBP2.32□□□□□ -2.04
LIMA1-210ENST00000552045 TANC1Q9C0D5 1861 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 PTPRFP10586 1907 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 SCN3AQ9NY46 2000 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 RAB5CP51148 216 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 POLR2HP52434 150 aaKnown RBP2.31□□□□□ -2.04
LIMA1-210ENST00000552045 DSCR4P56555 118 aaPredicted RBP2.31□□□□□ -2.04
LIMA1-210ENST00000552045 C1orf134Q5TEV5 83 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 C4orf22Q6V702 233 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 Q8N814 137 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 OR9Q1Q8NGQ5 310 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 CCDC115Q96NT0 180 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 GINS2Q9Y248 185 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 MED31Q9Y3C7 131 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 HSPB11Q9Y547 144 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 MED13LQ71F56 2210 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 PATJQ8NI35 1801 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 KIF20BQ96Q89 1820 aa2.31□□□□□ -2.04
LIMA1-210ENST00000552045 INTS1Q8N201 2190 aaKnown RBP2.3□□□□□ -2.04
LIMA1-210ENST00000552045 TLN2Q9Y4G6 2542 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 IGKV3D-7A0A0C4DH55 119 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 IGKV3OR2-268A0A0C4DH90 116 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 E7EUB6 86 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 M0R233 179 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 HCRTO43612 131 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 RPL7P18124 248 aaKnown RBP2.3□□□□□ -2.04
LIMA1-210ENST00000552045 CNBPP62633 177 aaKnown RBP2.3□□□□□ -2.04
LIMA1-210ENST00000552045 HRCT1Q6UXD1 115 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 C4orf3Q8WVX3 66 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms