RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 MAJINQ3KP22 176 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 KRTAP19-6Q3LI70 58 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 PHLDA2Q53GA4 152 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 UFSP1Q6NVU6 142 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 PATE2Q6UY27 113 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 Q6ZQT7 251 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 LHFPL1Q86WI0 220 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 BPIFA4PQ86YQ2 179 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 TMEM183AQ8IXX5 376 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 C10orf67Q8IYJ2 551 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 DHRSXQ8N5I4 330 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 C15orf56Q8N910 161 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 OR4D10Q8NGI6 311 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 DTD1Q8TEA8 209 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 GLYATL2Q8WU03 294 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 YIPF6Q96EC8 236 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 MED28Q9H204 178 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 ZNF492Q9P255 531 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 HIGD1AQ9Y241 93 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 PRELID1Q9Y255 219 aa1.28□□□□□ -2.2
PTCH1-223ENST00000551623 TRBV19A0A075B6N1 114 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 TRAV18A0A075B6X5 111 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 GVQW2A0A096LPI5 108 aaPredicted RBP1.27□□□□□ -2.21
PTCH1-223ENST00000551623 TRBV6-8A0A0A6YYG3 113 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 TRAV8-4A0A0B4J246 113 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 TRDV1A0A1B0GX56 115 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 RBAKDNA6NC62 111 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 MEIS3P1A6NDR6 274 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 FAM24AA6NFZ4 105 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 CEBPZOSA8MTT3 80 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 M0R3E3 92 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 GYG2O15488 501 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 HYPMO75409 117 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 P01737 135 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 CRPP02741 224 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 LINC00869P0C866 280 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 RNASE4P34096 147 aaKnown RBP1.27□□□□□ -2.21
PTCH1-223ENST00000551623 RCVRNP35243 200 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 UBE2D1P51668 147 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 PIGPP57054 158 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 GAGE2BQ13066 116 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 TRIM16LQ309B1 348 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 GAGE2EQ4V326 116 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 MPV17L2Q567V2 206 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 GAGE2AQ6NT46 116 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 AHSA2Q719I0 299 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 FP248Q71RG6 208 aaPredicted RBP1.27□□□□□ -2.21
PTCH1-223ENST00000551623 LHFPL5Q8TAF8 219 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 SUN5Q8TC36 379 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 LRRC20Q8TCA0 184 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 ZFAND1Q8TCF1 268 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 UFD1Q92890 307 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 DPH3Q96FX2 82 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 SGK494Q96LW2 274 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 C9orf85Q96MD7 179 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 C9orf16Q9BUW7 83 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 ARV1Q9H2C2 271 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 NDUFB11Q9NX14 153 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 GAGE2DQ9UEU5 116 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 Q9UF83 564 aa1.27□□□□□ -2.21
PTCH1-223ENST00000551623 IGKV2-24A0A0C4DH68 120 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 TRBV10-1A0A0K0K1A3 114 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 LOC100506127A0A0U1RQW1 187 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 A8MWV9 139 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 J3KRW8 73 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 IL5P05113 134 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 SULT1A3P0DMM9 295 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 SULT1A4P0DMN0 295 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 HIST1H1EP10412 219 aaKnown RBP1.26□□□□□ -2.21
PTCH1-223ENST00000551623 SLC25A6P12236 298 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 TBPP20226 339 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 MYL9P24844 172 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 UBE2D3P61077 147 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 RAB11AP62491 216 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 UBE2D2P62837 147 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 ERCC8Q13216 396 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 SMCO1Q147U7 214 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 SURF2Q15527 256 aaPredicted RBP1.26□□□□□ -2.21
PTCH1-223ENST00000551623 ZNF506Q5JVG8 444 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 LINC00242Q5T6M2 205 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 TMEM78Q5T7P6 136 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 ZFP1Q6P2D0 407 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 FAM159AQ6UWV7 190 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 CYP2G1PQ6ZSU1 146 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 CROCCP3Q8IVE0 287 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 SELENOHQ8IZQ5 122 aaKnown RBP1.26□□□□□ -2.21
PTCH1-223ENST00000551623 OR10G8Q8NGN5 311 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 TERB2Q8NHR7 220 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 LYPD6BQ8NI32 183 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 GPX8Q8TED1 209 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 TSKUQ8WUA8 353 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 CYGBQ8WWM9 190 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 KCNS1Q96KK3 526 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 FAM218AQ96MZ4 157 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 CIB3Q96Q77 187 aaPredicted RBP1.26□□□□□ -2.21
PTCH1-223ENST00000551623 ATP5SQ99766 215 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 C20orf85Q9H1P6 137 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 PARLQ9H300 379 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 PPDPFQ9H3Y8 114 aa1.26□□□□□ -2.21
PTCH1-223ENST00000551623 RBKSQ9H477 322 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms