RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 NOTCH2Q04721 2471 aa6.31□□□□□ -1.4
VPS29-203ENST00000546588 C7orf77A4D0Y5 90 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 K7EQG2 157 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 CCL24O00175 119 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 DEFB136Q30KP8 78 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 CENPWQ5EE01 88 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 C9orf47Q6ZRZ4 202 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 TMEM183AQ8IXX5 376 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.3□□□□□ -1.4
VPS29-203ENST00000546588 OR2K2Q8NGT1 345 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 DLX4Q92988 240 aaPredicted RBP6.3□□□□□ -1.4
VPS29-203ENST00000546588 YPEL4Q96NS1 127 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 IMMP2LQ96T52 175 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 ZNF492Q9P255 531 aa6.3□□□□□ -1.4
VPS29-203ENST00000546588 TMEM189A5PLL7 270 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 M0R3E3 92 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 ZNF207O43670 478 aaKnown RBP6.29□□□□□ -1.4
VPS29-203ENST00000546588 FLNBO75369 2602 aaKnown RBP6.29□□□□□ -1.4
VPS29-203ENST00000546588 GNG4P50150 75 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 GNG5P63218 68 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 CD164L2Q6UWJ8 174 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 GTF2H5Q6ZYL4 71 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 CMTM2Q8TAZ6 248 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 FAM19A4Q96LR4 140 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 ODF3Q96PU9 254 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 C2CD3Q4AC94 2353 aa6.29□□□□□ -1.4
VPS29-203ENST00000546588 TINCRA0A1B0GVN0 87 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 C19orf71A6NCJ1 209 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 J3QR89 54 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 CSN1S1P47710 185 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 AMTP48728 403 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 RPL24P83731 157 aaKnown RBP6.28□□□□□ -1.4
VPS29-203ENST00000546588 SMAGPQ0VAQ4 97 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 LCN12Q6JVE5 192 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 ZNF705AQ6ZN79 300 aaPredicted RBP6.28□□□□□ -1.4
VPS29-203ENST00000546588 PPDPFQ9H3Y8 114 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 MAP1LC3AQ9H492 121 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 OSTCQ9NRP0 149 aa6.28□□□□□ -1.4
VPS29-203ENST00000546588 TRAV9-1A0A075B6T8 112 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 IGHV3OR16-13A0A075B7E8 117 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 IGHV3-49A0A0A0MS15 119 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 IGHV3-74A0A0B4J1X5 117 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 IGHV3-66A0A0C4DH42 116 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 H3BTX0 84 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 OVOL1O14753 267 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 RAB5AP20339 215 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 UBE2G1P62253 170 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 DEFB114Q30KQ6 69 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 ZFAND6Q6FIF0 208 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 GOLT1AQ6ZVE7 132 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 LINC00479Q96M42 142 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 PYGO2Q9BRQ0 406 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 MIEN1Q9BRT3 115 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 MS4A6AQ9H2W1 248 aa6.27□□□□□ -1.41
VPS29-203ENST00000546588 FAM231BA6NCW3 169 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 IGLV1-51P01701 117 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 PFN1P07737 140 aaKnown RBP6.26□□□□□ -1.41
VPS29-203ENST00000546588 CRISP2P16562 243 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 PAFAH1B2P68402 229 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 ADIRFQ15847 76 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 KRTAP24-1Q3LI83 254 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 OR10J3Q5JRS4 329 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 ACTL10Q5JWF8 245 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 FAM162BQ5T6X4 162 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 BAGE2Q86Y30 109 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 HIST3H2BBQ8N257 126 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 ZNF256Q9Y2P7 627 aaPredicted RBP6.26□□□□□ -1.41
VPS29-203ENST00000546588 V9GYV3 84 aa6.26□□□□□ -1.41
VPS29-203ENST00000546588 TRBV24-1A0A075B6N3 115 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 TRAV8-1A0A0A6YYK1 113 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 PRAC2D3DTV9 90 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 VCYO14598 125 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 HLA-DMBP28068 263 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 INSL3P51460 131 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 PMVKQ15126 192 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 LINC01620Q4KN68 170 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 LINC00336Q6ZUF6 198 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 PRIMA1Q86XR5 153 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 TMEM61Q8N0U2 210 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 RNF182Q8N6D2 247 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 OR4B1Q8NGF8 309 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 LINC00477Q96M19 166 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 GFRA4Q9GZZ7 299 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 RPS10P5Q9NQ39 176 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 PRO0628Q9UI54 55 aa6.25□□□□□ -1.41
VPS29-203ENST00000546588 IGKV2-40A0A087WW87 121 aaPredicted RBP6.24□□□□□ -1.41
VPS29-203ENST00000546588 A0A087WX48 190 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 A0A0J9YX75 114 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 ZNF705FA8MVS1 300 aaPredicted RBP6.24□□□□□ -1.41
VPS29-203ENST00000546588 KLLNB2CW77 178 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 IGKV2D-40P01614 121 aaPredicted RBP6.24□□□□□ -1.41
VPS29-203ENST00000546588 CXCL1P09341 107 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 ZNF138P52744 262 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 FOXA3P55318 350 aaPredicted RBP6.24□□□□□ -1.41
VPS29-203ENST00000546588 NDUFA6P56556 154 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 SNRPD3P62318 126 aaKnown RBP6.24□□□□□ -1.41
VPS29-203ENST00000546588 ELOBQ15370 118 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 TAL2Q16559 108 aa6.24□□□□□ -1.41
VPS29-203ENST00000546588 IBA57Q5T440 356 aaKnown RBP6.24□□□□□ -1.41
VPS29-203ENST00000546588 LINC00322Q6ZN03 302 aaPredicted RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms