RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 SEC61GP60059 68 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 PROP1O75360 226 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 DEFB104AQ8WTQ1 72 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 KLK9Q9UKQ9 250 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 MDS2Q8NDY4 140 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 MRPL55Q7Z7F7 128 aaKnown RBP15.36■□□□□ 0.05
HDAC4-215ENST00000543185 SVIPQ8NHG7 77 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 TTC28Q96AY4 2481 aa15.36■□□□□ 0.05
HDAC4-215ENST00000543185 IGHV7-4-1A0A0J9YVY3 117 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 LGALS9O00182 355 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 TEX36Q5VZQ5 186 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 LRRK2Q5S007 2527 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 NREPQ16612 68 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 J3QLI3 93 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 ANXA2RQ3ZCQ2 193 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 PINLYPA6NC86 204 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 A0A0G2JNJ9 132 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 Q9UFV3 132 aa15.35■□□□□ 0.05
HDAC4-215ENST00000543185 ETV2O00321 342 aaPredicted RBP15.34■□□□□ 0.05
HDAC4-215ENST00000543185 IGFL4Q6B9Z1 124 aa15.34■□□□□ 0.05
HDAC4-215ENST00000543185 XCL2Q9UBD3 114 aa15.34■□□□□ 0.05
HDAC4-215ENST00000543185 PIFOQ8TCI5 191 aa15.33■□□□□ 0.05
HDAC4-215ENST00000543185 BRK1Q8WUW1 75 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 NXPH4O95158 308 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 NDUFV3P56181 108 aaKnown RBP15.33■□□□□ 0.04
HDAC4-215ENST00000543185 HIGD2BQ4VC39 106 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 UBE2BP63146 152 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 WT1-ASQ06250 92 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 UQCRQO14949 82 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 B3GALT5-AS1P59052 145 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 SND1-IT1Q9HBX3 110 aa15.33■□□□□ 0.04
HDAC4-215ENST00000543185 ZFYVE26Q68DK2 2539 aa15.32■□□□□ 0.04
HDAC4-215ENST00000543185 NOTCH2Q04721 2471 aa15.32■□□□□ 0.04
HDAC4-215ENST00000543185 EPOPA6NHQ4 379 aa15.32■□□□□ 0.04
HDAC4-215ENST00000543185 CRYGBP07316 175 aa15.32■□□□□ 0.04
HDAC4-215ENST00000543185 V9GYY9 64 aa15.31■□□□□ 0.04
HDAC4-215ENST00000543185 DUX4L9Q6RFH8 374 aaPredicted RBP15.31■□□□□ 0.04
HDAC4-215ENST00000543185 CD59P13987 128 aa15.31■□□□□ 0.04
HDAC4-215ENST00000543185 MRPL36Q9P0J6 103 aaKnown RBP15.31■□□□□ 0.04
HDAC4-215ENST00000543185 TRBV10-2A0A0K0K1G8 114 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 CLPSL1A2RUU4 121 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 C17orf82Q86X59 251 aaPredicted RBP15.3■□□□□ 0.04
HDAC4-215ENST00000543185 BAALCQ8WXS3 180 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 NDUFC1O43677 76 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 BRD3OSQ6XYD6 125 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 IGHV3-16A0A0C4DH30 117 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 LINC00643Q86TS7 51 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 ETDCA0A1B0GVM5 59 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 MSMBP08118 114 aa15.3■□□□□ 0.04
HDAC4-215ENST00000543185 LRP4O75096 1905 aa15.29■□□□□ 0.04
HDAC4-215ENST00000543185 XCL1P47992 114 aa15.29■□□□□ 0.04
HDAC4-215ENST00000543185 COX7B2Q8TF08 81 aa15.29■□□□□ 0.04
HDAC4-215ENST00000543185 IGHV1-69P01742 117 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 PRR20EP86478 221 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 PRR20CP86479 221 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 PRR20DP86480 221 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 PRR20BP86481 221 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 PRR20AP86496 221 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 C17orf58Q2M2W7 97 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 C15orf65H3BRN8 121 aa15.28■□□□□ 0.04
HDAC4-215ENST00000543185 PRB4P10163 310 aaPredicted RBP15.28■□□□□ 0.04
HDAC4-215ENST00000543185 C1orf147Q96MC9 270 aaPredicted RBP15.28■□□□□ 0.04
HDAC4-215ENST00000543185 FHL1Q13642 323 aa15.27■□□□□ 0.04
HDAC4-215ENST00000543185 TOMM6Q96B49 74 aa15.27■□□□□ 0.04
HDAC4-215ENST00000543185 A4D1N5 150 aa15.27■□□□□ 0.04
HDAC4-215ENST00000543185 C14orf132Q9NPU4 83 aa15.27■□□□□ 0.04
HDAC4-215ENST00000543185 RAI1Q7Z5J4 1906 aaPredicted RBP15.27■□□□□ 0.04
HDAC4-215ENST00000543185 FAM120AOSQ5T036 256 aa15.27■□□□□ 0.04
HDAC4-215ENST00000543185 KAAG1Q9UBP8 84 aa15.27■□□□□ 0.03
HDAC4-215ENST00000543185 COLQQ9Y215 455 aaPredicted RBP15.27■□□□□ 0.03
HDAC4-215ENST00000543185 MRPL23Q16540 153 aaKnown RBP15.27■□□□□ 0.03
HDAC4-215ENST00000543185 C11orf86A6NJI1 115 aa15.26■□□□□ 0.03
HDAC4-215ENST00000543185 TIMM17AQ99595 171 aa15.26■□□□□ 0.03
HDAC4-215ENST00000543185 E9PLD3 99 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 Q6ZUT4 128 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 THSD7BQ9C0I4 1608 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 LYPD2Q6UXB3 125 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 TMEM61Q8N0U2 210 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 FOXE3Q13461 319 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 RNASE8Q8TDE3 154 aaKnown RBP15.25■□□□□ 0.03
HDAC4-215ENST00000543185 C16orf74Q96GX8 76 aa15.25■□□□□ 0.03
HDAC4-215ENST00000543185 MLANAQ16655 118 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 Q8N1Y9 231 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 ZNF581Q9P0T4 197 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 K7EQD1 137 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 COX7A2LO14548 114 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 SLX1AQ9BQ83 275 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 TRAV12-2A0A075B6T6 113 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 LINC00205P59089 165 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 BPESC1Q9GZL8 116 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 ELANEP08246 267 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 CTRLP40313 264 aa15.24■□□□□ 0.03
HDAC4-215ENST00000543185 IGKV1-39P01597 117 aa15.23■□□□□ 0.03
HDAC4-215ENST00000543185 IGKV1D-39P04432 117 aa15.23■□□□□ 0.03
HDAC4-215ENST00000543185 CGB3P0DN86 165 aa15.23■□□□□ 0.03
HDAC4-215ENST00000543185 TRAV4A0A0B4J268 109 aa15.23■□□□□ 0.03
HDAC4-215ENST00000543185 IGHV1-58A0A0C4DH39 117 aa15.23■□□□□ 0.03
HDAC4-215ENST00000543185 MED14OSP0DP75 135 aa15.23■□□□□ 0.03
HDAC4-215ENST00000543185 COL5A1P20908 1838 aaPredicted RBP15.22■□□□□ 0.03
HDAC4-215ENST00000543185 LHBP01229 141 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms