RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 KIR2DL5AQ8N109 375 aa12.92□□□□□ -0.34
CLIP1-215ENST00000541108 KIR2DL5BQ8NHK3 375 aa12.92□□□□□ -0.34
CLIP1-215ENST00000541108 C9orf85Q96MD7 179 aa12.92□□□□□ -0.34
CLIP1-215ENST00000541108 MUC21A0A0G2JKD1 596 aa12.91□□□□□ -0.34
CLIP1-215ENST00000541108 MUC21A0A140T8X8 626 aa12.91□□□□□ -0.34
CLIP1-215ENST00000541108 RIPPLY3P57055 190 aa12.91□□□□□ -0.34
CLIP1-215ENST00000541108 MDFICQ9P1T7 246 aa12.91□□□□□ -0.34
CLIP1-215ENST00000541108 GOLT1BQ9Y3E0 138 aa12.91□□□□□ -0.34
CLIP1-215ENST00000541108 APCSP02743 223 aa12.9□□□□□ -0.34
CLIP1-215ENST00000541108 KRTAP10-11P60412 298 aa12.9□□□□□ -0.34
CLIP1-215ENST00000541108 TMEM191AQ9H0A3 160 aa12.9□□□□□ -0.34
CLIP1-215ENST00000541108 HTN1P15515 57 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 SSTP61278 116 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 SLAQ13239 276 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 SAMD5Q5TGI4 173 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 MSRB1Q9NZV6 116 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 TIMM8BQ9Y5J9 83 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BKO60814 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 NXPH4O95158 308 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BJP06899 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 TRGC1P0CF51 173 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BOP23527 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BBP33778 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 APOC4P55056 127 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BDP58876 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BCP62807 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST2H2BEQ16778 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-215ENST00000541108 ZNF705AQ6ZN79 300 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-215ENST00000541108 ZFP82Q8N141 532 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BHQ93079 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BNQ99877 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 HIST1H2BMQ99879 126 aa12.89□□□□□ -0.35
CLIP1-215ENST00000541108 ANK2Q01484 3957 aa12.88□□□□□ -0.35
CLIP1-215ENST00000541108 PKD1L1Q8TDX9 2849 aa12.88□□□□□ -0.35
CLIP1-215ENST00000541108 A8MZ25 164 aa12.88□□□□□ -0.35
CLIP1-215ENST00000541108 SMIM15Q7Z3B0 74 aa12.88□□□□□ -0.35
CLIP1-215ENST00000541108 G3V4G9 280 aa12.87□□□□□ -0.35
CLIP1-215ENST00000541108 M0R381 172 aa12.87□□□□□ -0.35
CLIP1-215ENST00000541108 IGHV4-30-4P0DP06 118 aa12.87□□□□□ -0.35
CLIP1-215ENST00000541108 ZNF415Q09FC8 603 aa12.87□□□□□ -0.35
CLIP1-215ENST00000541108 DMRTA1Q5VZB9 504 aa12.87□□□□□ -0.35
CLIP1-215ENST00000541108 MUC4Q99102 2169 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 IGHV3OR16-12A0A075B7B8 117 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 FAM104BQ5XKR9 115 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 C11orf72Q8NBR9 251 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 SYT8Q8NBV8 401 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 PTH2Q96A98 100 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 UBE2CO00762 179 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 PIK3CD-AS1Q5SR53 167 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 SPXQ9BT56 116 aa12.86□□□□□ -0.35
CLIP1-215ENST00000541108 EVI2AP22794 236 aa12.85□□□□□ -0.35
CLIP1-215ENST00000541108 TMEM263Q8WUH6 116 aaKnown RBP12.85□□□□□ -0.35
CLIP1-215ENST00000541108 PRM2P04554 102 aa12.84□□□□□ -0.35
CLIP1-215ENST00000541108 KIAA1644Q3SXP7 199 aa12.84□□□□□ -0.35
CLIP1-215ENST00000541108 RNASE8Q8TDE3 154 aaKnown RBP12.84□□□□□ -0.35
CLIP1-215ENST00000541108 SPRY2O43597 315 aa12.83□□□□□ -0.35
CLIP1-215ENST00000541108 AZU1P20160 251 aa12.83□□□□□ -0.35
CLIP1-215ENST00000541108 AMN1Q8IY45 258 aa12.83□□□□□ -0.35
CLIP1-215ENST00000541108 AP1S3Q96PC3 154 aa12.83□□□□□ -0.35
CLIP1-215ENST00000541108 RCHY1Q96PM5 261 aa12.83□□□□□ -0.35
CLIP1-215ENST00000541108 GSN-AS1Q9NRJ2 163 aa12.83□□□□□ -0.35
CLIP1-215ENST00000541108 CMYA5Q8N3K9 4069 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 M0R2P5 195 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 S100A6P06703 90 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 RAB4AP20338 218 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 RRN3P1Q2M238 152 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 ZNF876PQ49A33 203 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 C16orf74Q96GX8 76 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 NDUFAF3Q9BU61 184 aa12.83□□□□□ -0.36
CLIP1-215ENST00000541108 SMIM9A6NGZ8 99 aa12.82□□□□□ -0.36
CLIP1-215ENST00000541108 KRTAP21-3Q3LHN1 58 aa12.82□□□□□ -0.36
CLIP1-215ENST00000541108 ALKBH7Q9BT30 221 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-215ENST00000541108 DPH3P1Q9H4G8 78 aa12.82□□□□□ -0.36
CLIP1-215ENST00000541108 SRIP30626 198 aa12.81□□□□□ -0.36
CLIP1-215ENST00000541108 IL17DQ8TAD2 202 aa12.81□□□□□ -0.36
CLIP1-215ENST00000541108 RNF185Q96GF1 192 aa12.81□□□□□ -0.36
CLIP1-215ENST00000541108 PPBPP02775 128 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 Q0VG73 95 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 MRPL51Q4U2R6 128 aaKnown RBP12.8□□□□□ -0.36
CLIP1-215ENST00000541108 OR10J3Q5JRS4 329 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 Q6ZWC4 215 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 C14orf178Q8N769 122 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-215ENST00000541108 U3KQK5 164 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 SMIM17P0DL12 118 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 COA6Q5JTJ3 125 aaKnown RBP12.8□□□□□ -0.36
CLIP1-215ENST00000541108 KPRPQ5T749 579 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-215ENST00000541108 RASL10AQ92737 203 aa12.8□□□□□ -0.36
CLIP1-215ENST00000541108 NDUFA6P56556 154 aa12.79□□□□□ -0.36
CLIP1-215ENST00000541108 DAZ2Q13117 558 aaKnown RBP12.79□□□□□ -0.36
CLIP1-215ENST00000541108 LGALS9BQ3B8N2 356 aa12.79□□□□□ -0.36
CLIP1-215ENST00000541108 ORMDL3Q8N138 153 aa12.79□□□□□ -0.36
CLIP1-215ENST00000541108 KIF25-AS1Q9Y6Z4 181 aa12.79□□□□□ -0.36
CLIP1-215ENST00000541108 A8MWV9 139 aa12.78□□□□□ -0.36
CLIP1-215ENST00000541108 CKS2P33552 79 aa12.78□□□□□ -0.36
CLIP1-215ENST00000541108 POM121L12Q8N7R1 296 aa12.78□□□□□ -0.36
CLIP1-215ENST00000541108 C5orf52A6NGY3 159 aa12.77□□□□□ -0.36
CLIP1-215ENST00000541108 D6R8Y8 96 aa12.77□□□□□ -0.36
CLIP1-215ENST00000541108 MRAP2Q96G30 205 aa12.77□□□□□ -0.36
CLIP1-215ENST00000541108 LAMTOR2Q9Y2Q5 125 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms