RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SCRT2Q9NQ03 307 aa10.35□□□□□ -0.75
RTN3-210ENST00000540798 IGHV4OR15-8A0A075B7B6 117 aa10.34□□□□□ -0.75
RTN3-210ENST00000540798 A0A087WW49 117 aa10.34□□□□□ -0.75
RTN3-210ENST00000540798 MS4A6AQ9H2W1 248 aa10.34□□□□□ -0.75
RTN3-210ENST00000540798 TEX15Q9BXT5 2789 aa10.34□□□□□ -0.75
RTN3-210ENST00000540798 ABCA12Q86UK0 2595 aa10.34□□□□□ -0.75
RTN3-210ENST00000540798 TNFRSF6BO95407 300 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 SRD5A1P18405 259 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 EVI2AP22794 236 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 NAV2Q8IVL1 2488 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 MAP1LC3AQ9H492 121 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 IGKV3-7A0A075B6H7 116 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 ODF3Q96PU9 254 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 AKAP9Q99996 3911 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 IGLV2-18A0A075B6J9 118 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 G3V4G9 280 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 H3BVH4 76 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 HBDP02042 147 aa10.33□□□□□ -0.76
RTN3-210ENST00000540798 K7EQG2 157 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 NUDT3O95989 172 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 ANXA2RQ3ZCQ2 193 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 NRACQ8N912 160 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 ST20Q9HBF5 79 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 KIR3DS1Q14943 382 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 TMEM86BQ8N661 226 aa10.32□□□□□ -0.76
RTN3-210ENST00000540798 NXT2Q9NPJ8 142 aaKnown RBP10.32□□□□□ -0.76
RTN3-210ENST00000540798 HOXD3P31249 432 aaPredicted RBP10.31□□□□□ -0.76
RTN3-210ENST00000540798 RNASE4P34096 147 aaKnown RBP10.31□□□□□ -0.76
RTN3-210ENST00000540798 A0A1B0GV72 72 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 SYNJ2BPP57105 145 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 SPANXN1Q5VSR9 72 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 MRPS16Q9Y3D3 137 aaKnown RBP10.31□□□□□ -0.76
RTN3-210ENST00000540798 J3KRW8 73 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 NXPH4O95158 308 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 GATA1P15976 413 aaPredicted RBP10.31□□□□□ -0.76
RTN3-210ENST00000540798 ASIPP42127 132 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 OR2K2Q8NGT1 345 aa10.31□□□□□ -0.76
RTN3-210ENST00000540798 Q8N8P6 123 aa10.3□□□□□ -0.76
RTN3-210ENST00000540798 RNASE3P12724 160 aaKnown RBP10.3□□□□□ -0.76
RTN3-210ENST00000540798 ADAMTSL5Q6ZMM2 481 aa10.3□□□□□ -0.76
RTN3-210ENST00000540798 MRAP2Q96G30 205 aa10.3□□□□□ -0.76
RTN3-210ENST00000540798 TEX29Q8N6K0 151 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 WFDC11Q8NEX6 87 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 A0A0J9YX75 114 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 hDV102S1A0JD36 115 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 LGALS9BQ3B8N2 356 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 LGALS9CQ6DKI2 356 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 MCRIP2Q9BUT9 160 aaKnown RBP10.29□□□□□ -0.76
RTN3-210ENST00000540798 FCER1GP30273 86 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 WFDC3Q8IUB2 231 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 POM121L12Q8N7R1 296 aa10.29□□□□□ -0.76
RTN3-210ENST00000540798 CKS1BP61024 79 aa10.28□□□□□ -0.76
RTN3-210ENST00000540798 CREBBPQ92793 2442 aa10.28□□□□□ -0.76
RTN3-210ENST00000540798 ITPR3Q14573 2671 aa10.28□□□□□ -0.76
RTN3-210ENST00000540798 GNRH2O43555 120 aa10.28□□□□□ -0.76
RTN3-210ENST00000540798 SNRPD3P62318 126 aaKnown RBP10.28□□□□□ -0.76
RTN3-210ENST00000540798 LEPP41159 167 aa10.27□□□□□ -0.76
RTN3-210ENST00000540798 FXYD7P58549 80 aa10.27□□□□□ -0.76
RTN3-210ENST00000540798 TCTEX1D4Q5JR98 221 aa10.27□□□□□ -0.76
RTN3-210ENST00000540798 PSMG4Q5JS54 123 aa10.27□□□□□ -0.76
RTN3-210ENST00000540798 TIMM8BQ9Y5J9 83 aaPredicted RBP10.27□□□□□ -0.76
RTN3-210ENST00000540798 PDZD2O15018 2839 aa10.27□□□□□ -0.76
RTN3-210ENST00000540798 ZNF688P0C7X2 276 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 C18orf65Q6ZTR6 163 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 C4orf3Q8WVX3 66 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 TRAV26-2A0A0B4J265 109 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 BVES-AS1Q5T3Y7 98 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 DPF1Q92782 380 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 IFI27L1Q96BM0 104 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 DPH3P1Q9H4G8 78 aa10.27□□□□□ -0.77
RTN3-210ENST00000540798 C7orf71A4D174 169 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 GAGE10A6NGK3 116 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 S100A4P26447 101 aaKnown RBP10.26□□□□□ -0.77
RTN3-210ENST00000540798 DUX5Q96PT3 197 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 PHLDA3Q9Y5J5 127 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 H0Y8G0 127 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 PMCHL2Q9BQD1 86 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 SS18L2Q9UHA2 77 aa10.26□□□□□ -0.77
RTN3-210ENST00000540798 M0R381 172 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 KRTAP1-1Q07627 177 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 MUC4Q99102 2169 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 LINC01619G3V211 115 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 SLURP1P55000 103 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 HIST2H2BCQ6DN03 193 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 KIF25-AS1Q9Y6Z4 181 aa10.25□□□□□ -0.77
RTN3-210ENST00000540798 RPL24P83731 157 aaKnown RBP10.24□□□□□ -0.77
RTN3-210ENST00000540798 TRAV2A0A0B4J234 112 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 CD5LO43866 347 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 FOXI2Q6ZQN5 318 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 RASL10AQ92737 203 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 A8MTW9 85 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 SPRY2O43597 315 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 LINC00315P59091 139 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 FAM159AQ6UWV7 190 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 AMTNQ6UX39 209 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 Q6ZSV7 163 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 NOTCH2Q04721 2471 aa10.24□□□□□ -0.77
RTN3-210ENST00000540798 DEFB136Q30KP8 78 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 AP1S3Q96PC3 154 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 JMJD8Q96S16 334 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms