RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 Q6ZQT7 251 aa10.9□□□□□ -0.66
USP3-204ENST00000540797 Q6YL49 198 aa10.9□□□□□ -0.67
USP3-204ENST00000540797 INSL3P51460 131 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 PRSS29PA6NIE9 313 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 MRPL23Q16540 153 aaKnown RBP10.89□□□□□ -0.67
USP3-204ENST00000540797 NAA38Q9BRA0 125 aaKnown RBP10.89□□□□□ -0.67
USP3-204ENST00000540797 MEGF9Q9H1U4 602 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 Q9HAA7 133 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 ICOSQ9Y6W8 199 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 GYPEP15421 78 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 RNASE13Q5GAN3 156 aaKnown RBP10.89□□□□□ -0.67
USP3-204ENST00000540797 CDK2AP2O75956 126 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 TRBV12-3P01733 135 aa10.89□□□□□ -0.67
USP3-204ENST00000540797 CCL18P55774 89 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 HERVK_113P63121 156 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 IGF2RP11717 2491 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 OVOL2Q9BRP0 275 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 C10orf142B7Z368 130 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 DEFB135Q30KP9 77 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 FANCD2OSQ96PS1 177 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 H3BMM0 161 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 FSTL3O95633 263 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 C11orf71Q6IPW1 123 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 UBE2WQ96B02 151 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 LINC00574Q9H8X3 128 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 DYSFO75923 2080 aa10.88□□□□□ -0.67
USP3-204ENST00000540797 UNQ9165/PRO28630Q6UXU0 137 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 SONP18583 2426 aaKnown RBP10.87□□□□□ -0.67
USP3-204ENST00000540797 MPV17L2Q567V2 206 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 TMEM61Q8N0U2 210 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 CRLF1O75462 422 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 XCL1P47992 114 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 MRPL36Q9P0J6 103 aaKnown RBP10.87□□□□□ -0.67
USP3-204ENST00000540797 PRAC2D3DTV9 90 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 NDUFS6O75380 124 aaKnown RBP10.87□□□□□ -0.67
USP3-204ENST00000540797 NDUFA12Q9UI09 145 aa10.87□□□□□ -0.67
USP3-204ENST00000540797 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.86□□□□□ -0.67
USP3-204ENST00000540797 IGKV2-29A2NJV5 120 aaPredicted RBP10.86□□□□□ -0.67
USP3-204ENST00000540797 NDUFA11Q86Y39 141 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 ATP6V0E2Q8NHE4 81 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 ESM1Q9NQ30 184 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 IGHG4P01861 327 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 PYY3Q5JQD4 70 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 KLF12Q9Y4X4 402 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 LINC01548A6NM66 108 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 C1orf43Q9BWL3 253 aa10.86□□□□□ -0.67
USP3-204ENST00000540797 MUC22E2RYF6 1773 aaPredicted RBP10.85□□□□□ -0.67
USP3-204ENST00000540797 TRAV8-4A0A0B4J246 113 aa10.85□□□□□ -0.67
USP3-204ENST00000540797 K7EQD1 137 aa10.85□□□□□ -0.67
USP3-204ENST00000540797 MRPL35Q9NZE8 188 aaKnown RBP10.85□□□□□ -0.67
USP3-204ENST00000540797 CEP192Q8TEP8 1941 aa10.85□□□□□ -0.67
USP3-204ENST00000540797 SH2D6Q7Z4S9 175 aa10.85□□□□□ -0.67
USP3-204ENST00000540797 FAM167A-AS1Q96KT0 104 aa10.85□□□□□ -0.67
USP3-204ENST00000540797 DNAJC30Q96LL9 226 aa10.85□□□□□ -0.67
USP3-204ENST00000540797 ZNF48Q96MX3 618 aaPredicted RBP10.85□□□□□ -0.67
USP3-204ENST00000540797 TRAV8-3A0A0A6YYJ7 113 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 SPINK8P0C7L1 97 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 C9orf47Q6ZRZ4 202 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 Q8N1Y9 231 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 F8VRH5 84 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 DEFB4AO15263 64 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 C10orf91Q5T1B1 145 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 SUMO4Q6EEV6 95 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 C2orf82Q6UX34 121 aa10.84□□□□□ -0.67
USP3-204ENST00000540797 PLA2G2AP14555 144 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 KIR3DS1Q14943 382 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 NAV2Q8IVL1 2488 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 F8W735 103 aaPredicted RBP10.83□□□□□ -0.68
USP3-204ENST00000540797 UTF1Q5T230 341 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 DEFB1P60022 68 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 LGALS9BQ3B8N2 356 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 LGALS9CQ6DKI2 356 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 LYPD6BQ8NI32 183 aa10.83□□□□□ -0.68
USP3-204ENST00000540797 NCOA6Q14686 2063 aaPredicted RBP10.83□□□□□ -0.68
USP3-204ENST00000540797 LY6G6DO95868 133 aa10.82□□□□□ -0.68
USP3-204ENST00000540797 GATA1P15976 413 aaPredicted RBP10.82□□□□□ -0.68
USP3-204ENST00000540797 CCDC140Q96MF4 163 aa10.82□□□□□ -0.68
USP3-204ENST00000540797 KMT2EQ8IZD2 1858 aa10.82□□□□□ -0.68
USP3-204ENST00000540797 IGF1P05019 195 aa10.82□□□□□ -0.68
USP3-204ENST00000540797 IGHV3-30P01768 117 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 IGHV3-33P01772 117 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 IGHV3-30-3P0DP02 117 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 IGHV3-30-5P0DP03 117 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 DEFB125Q8N687 156 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 SNHG12Q9BXW3 62 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 K7EMI3 77 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 C21orf62-AS1Q17RA5 79 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 RPL39LQ96EH5 51 aaKnown RBP10.81□□□□□ -0.68
USP3-204ENST00000540797 MED12LQ86YW9 2145 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 PROP1O75360 226 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 TMEM126AQ9H061 195 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 HHLA3Q9XRX5 114 aa10.81□□□□□ -0.68
USP3-204ENST00000540797 DAZ2Q13117 558 aaKnown RBP10.8□□□□□ -0.68
USP3-204ENST00000540797 DAZ4Q86SG3 579 aaKnown RBP10.8□□□□□ -0.68
USP3-204ENST00000540797 DAZ3Q9NR90 486 aaKnown RBP10.8□□□□□ -0.68
USP3-204ENST00000540797 CCDC168Q8NDH2 2452 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 MAP6D1Q9H9H5 199 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 SPANXA1Q9NS26 97 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 MSRB1Q9NZV6 116 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 DSCAMO60469 2012 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms