RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 TMEM238C9JI98 176 aa7.79□□□□□ -1.16
TRAF1-202ENST00000540010 F6UB75 175 aa7.79□□□□□ -1.16
TRAF1-202ENST00000540010 IGHV3-53P01767 116 aa7.79□□□□□ -1.16
TRAF1-202ENST00000540010 DUSP14O95147 198 aaKnown RBP7.79□□□□□ -1.16
TRAF1-202ENST00000540010 HOXB4P17483 251 aaPredicted RBP7.79□□□□□ -1.16
TRAF1-202ENST00000540010 ANXA2RQ3ZCQ2 193 aa7.79□□□□□ -1.16
TRAF1-202ENST00000540010 COPS9Q8WXC6 57 aa7.79□□□□□ -1.16
TRAF1-202ENST00000540010 C1orf159Q96HA4 380 aa7.79□□□□□ -1.16
TRAF1-202ENST00000540010 SPINK13Q1W4C9 94 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 AGPAT4-IT1Q9H0P7 198 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 TRAV12-2A0A075B6T6 113 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 INS-IGF2F8WCM5 200 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 LY6LH3BQJ8 138 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 FOXE3Q13461 319 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 SYNJ2BPP57105 145 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 ZFAND6Q6FIF0 208 aa7.78□□□□□ -1.16
TRAF1-202ENST00000540010 ITPR1Q14643 2758 aa7.77□□□□□ -1.16
TRAF1-202ENST00000540010 TRAV8-4A0A0B4J246 113 aa7.77□□□□□ -1.16
TRAF1-202ENST00000540010 SDHAF1A6NFY7 115 aa7.77□□□□□ -1.16
TRAF1-202ENST00000540010 F8VRH5 84 aa7.77□□□□□ -1.16
TRAF1-202ENST00000540010 LINC00322Q6ZN03 302 aaPredicted RBP7.77□□□□□ -1.16
TRAF1-202ENST00000540010 PRSS22Q9GZN4 317 aa7.77□□□□□ -1.16
TRAF1-202ENST00000540010 KLK9Q9UKQ9 250 aa7.77□□□□□ -1.16
TRAF1-202ENST00000540010 K7EIM0 57 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 C2orf82Q6UX34 121 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 SH2D6Q7Z4S9 175 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 STHQ8IWL8 128 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 MAPK1IP1LQ8NDC0 245 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 UBE2E2Q96LR5 201 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 SMIM2Q9BVW6 85 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 SMG1Q96Q15 3661 aaKnown RBP7.77□□□□□ -1.17
TRAF1-202ENST00000540010 TRAV8-3A0A0A6YYJ7 113 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 TRAV13-1A0A0B4J241 112 aa7.77□□□□□ -1.17
TRAF1-202ENST00000540010 FAM110DQ8TAY7 271 aaPredicted RBP7.77□□□□□ -1.17
TRAF1-202ENST00000540010 ODF3BA8MYP8 253 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 UBE2E1P51965 193 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 LMO4P61968 165 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 PIP4P2Q8N4L2 257 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 DAZ1Q9NQZ3 744 aaKnown RBP7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TRGV11A0A075B6L2 103 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TRBV25-1A0A075B6N4 114 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TEX48A0A1B0GUV7 120 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 CRYGBP07316 175 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TEX22C9J3V5 150 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TAX1BP3O14907 124 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 HLA-DRB4P13762 266 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TMEM190Q8WZ59 177 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 SIRPDQ9H106 197 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TP53TG3Q9ULZ0 132 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 HLA-DRB4X5D2U9 266 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 MYMXA0A1B0GTQ4 84 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 C2orf70A6NJV1 201 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 HTN3P15516 51 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 CDKN1BP46527 198 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 LINC01545Q5VT33 79 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 CFHR4Q92496 578 aa7.76□□□□□ -1.17
TRAF1-202ENST00000540010 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.75□□□□□ -1.17
TRAF1-202ENST00000540010 I3L2K1 104 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 IGLV2-8P01709 118 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 GDF5OSQ5U4N7 250 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 CEND1Q8N111 149 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 C11orf68Q9H3H3 251 aaKnown RBP7.75□□□□□ -1.17
TRAF1-202ENST00000540010 GNRH2O43555 120 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 AZU1P20160 251 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 CHCHD5Q9BSY4 110 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 TIMM21Q9BVV7 248 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 TRGV1A0A0A0MS02 117 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 IGHV3-16A0A0C4DH30 117 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 IGHV4-61A0A0C4DH41 118 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 GAGE12HA6NDE8 117 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 ADARB2-AS1A8MUL3 147 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 C12orf74Q32Q52 190 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 PLEKHB2Q96CS7 222 aa7.75□□□□□ -1.17
TRAF1-202ENST00000540010 LINC00158P58513 81 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 DEFB131AP59861 70 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 NRGNQ92686 78 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 TRGV4A0A0C4DH28 118 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 FXYD2P54710 66 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 LOXL1Q08397 574 aaPredicted RBP7.74□□□□□ -1.17
TRAF1-202ENST00000540010 SCRT2Q9NQ03 307 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 PMVKQ15126 192 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 MRGPRG-AS1Q2M3A8 158 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 RNASE13Q5GAN3 156 aaKnown RBP7.74□□□□□ -1.17
TRAF1-202ENST00000540010 NPBQ8NG41 125 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 USMG5Q96IX5 58 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 PEMTQ9UBM1 199 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 ABCA12Q86UK0 2595 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 LRRK2Q5S007 2527 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 PRSS29PA6NIE9 313 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 ATXN8Q156A1 80 aa7.74□□□□□ -1.17
TRAF1-202ENST00000540010 PRAC2D3DTV9 90 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 F8W1H4 67 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 JMJD1CQ15652 2540 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 ZNF462Q96JM2 2506 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 IGKV1D-37A0A075B6S9 117 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 DEFB1P60022 68 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 KLHL30-AS1Q8NEE0 82 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 YAE1D1Q9NRH1 226 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 KLF12Q9Y4X4 402 aa7.73□□□□□ -1.17
TRAF1-202ENST00000540010 RNF114Q9Y508 228 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms