RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 MRAP2Q96G30 205 aa15.38■□□□□ 0.05
TMEM260-203ENST00000539559 RNF223E7ERA6 249 aa15.37■□□□□ 0.05
TMEM260-203ENST00000539559 C1orf122Q6ZSJ8 110 aa15.37■□□□□ 0.05
TMEM260-203ENST00000539559 ZFAND2AQ8N6M9 145 aa15.37■□□□□ 0.05
TMEM260-203ENST00000539559 RPL11P62913 178 aaKnown RBP15.37■□□□□ 0.05
TMEM260-203ENST00000539559 WFDC12Q8WWY7 111 aa15.37■□□□□ 0.05
TMEM260-203ENST00000539559 PHLDA3Q9Y5J5 127 aa15.37■□□□□ 0.05
TMEM260-203ENST00000539559 A0A1B0GWB2 263 aa15.36■□□□□ 0.05
TMEM260-203ENST00000539559 ZNF815PA8K554 130 aa15.36■□□□□ 0.05
TMEM260-203ENST00000539559 SLC25A16P16260 332 aa15.36■□□□□ 0.05
TMEM260-203ENST00000539559 RNASE4P34096 147 aaKnown RBP15.36■□□□□ 0.05
TMEM260-203ENST00000539559 GPHB5Q86YW7 130 aa15.36■□□□□ 0.05
TMEM260-203ENST00000539559 TRAV12-1A0A0B4J245 112 aa15.36■□□□□ 0.05
TMEM260-203ENST00000539559 U3KQE9 123 aa15.36■□□□□ 0.05
TMEM260-203ENST00000539559 CENPVL3A0A0U1RRI6 287 aa15.35■□□□□ 0.05
TMEM260-203ENST00000539559 ORMDL2Q53FV1 153 aa15.35■□□□□ 0.05
TMEM260-203ENST00000539559 SCGB1D4Q6XE38 83 aa15.35■□□□□ 0.05
TMEM260-203ENST00000539559 HOXA3O43365 443 aaPredicted RBP15.35■□□□□ 0.05
TMEM260-203ENST00000539559 DUSP14O95147 198 aaKnown RBP15.35■□□□□ 0.05
TMEM260-203ENST00000539559 MRPL16Q9NX20 251 aaKnown RBP15.35■□□□□ 0.05
TMEM260-203ENST00000539559 TRBV7-1A0A0A6YYK4 115 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 LINC01549A6NIU2 74 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 UBE2E1P51965 193 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 MUC4Q99102 2169 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 IGHV3-11P01762 117 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 MRPL53Q96EL3 112 aaKnown RBP15.34■□□□□ 0.05
TMEM260-203ENST00000539559 C20orf78Q9BR46 151 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 DPH3P1Q9H4G8 78 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 JPT2Q9H910 190 aa15.34■□□□□ 0.05
TMEM260-203ENST00000539559 SRD5A1P18405 259 aa15.33■□□□□ 0.05
TMEM260-203ENST00000539559 APOMO95445 188 aa15.33■□□□□ 0.04
TMEM260-203ENST00000539559 CLEC2AQ6UVW9 174 aa15.33■□□□□ 0.04
TMEM260-203ENST00000539559 ZFP2Q6ZN57 461 aa15.33■□□□□ 0.04
TMEM260-203ENST00000539559 LOC107984156A0A0G2JMH3 177 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 ARL3P36405 182 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 ASIPP42127 132 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 SRSF9Q13242 221 aaKnown RBP eCLIP15.32■□□□□ 0.04
TMEM260-203ENST00000539559 ARL17AQ8IVW1 177 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 C5orf56Q8N8D9 126 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 SPOCK3Q9BQ16 436 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 ACACBO00763 2458 aa15.32■□□□□ 0.04
TMEM260-203ENST00000539559 TGFAP01135 160 aa15.31■□□□□ 0.04
TMEM260-203ENST00000539559 J3QR89 54 aa15.31■□□□□ 0.04
TMEM260-203ENST00000539559 OR10J6PQ8NGY7 276 aa15.31■□□□□ 0.04
TMEM260-203ENST00000539559 PTH2Q96A98 100 aa15.31■□□□□ 0.04
TMEM260-203ENST00000539559 TRAV21A0A0B4J279 112 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 SMCPP49901 116 aaPredicted RBP15.3■□□□□ 0.04
TMEM260-203ENST00000539559 C9orf139Q6ZV77 190 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 BPESC1Q9GZL8 116 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 TRAV41A0A0B4J266 112 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 CRYGDP07320 174 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 PSMB2P49721 201 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 RPL39P62891 51 aaKnown RBP15.3■□□□□ 0.04
TMEM260-203ENST00000539559 ZNF418Q8TF45 676 aaPredicted RBP15.3■□□□□ 0.04
TMEM260-203ENST00000539559 C11orf86A6NJI1 115 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 RNASE3P12724 160 aaKnown RBP15.3■□□□□ 0.04
TMEM260-203ENST00000539559 BRD3OSQ6XYD6 125 aa15.3■□□□□ 0.04
TMEM260-203ENST00000539559 NDUFS8O00217 210 aa15.29■□□□□ 0.04
TMEM260-203ENST00000539559 NPFFO15130 113 aa15.29■□□□□ 0.04
TMEM260-203ENST00000539559 EDN2P20800 178 aa15.29■□□□□ 0.04
TMEM260-203ENST00000539559 TSHBP01222 138 aa15.29■□□□□ 0.04
TMEM260-203ENST00000539559 SPATA25Q9BR10 227 aa15.29■□□□□ 0.04
TMEM260-203ENST00000539559 A0A087WWL8 130 aa15.28■□□□□ 0.04
TMEM260-203ENST00000539559 TSPAN13O95857 204 aa15.28■□□□□ 0.04
TMEM260-203ENST00000539559 LINC00477Q96M19 166 aa15.28■□□□□ 0.04
TMEM260-203ENST00000539559 TP53TG1Q9Y2A0 90 aa15.28■□□□□ 0.04
TMEM260-203ENST00000539559 CIDEAO60543 219 aa15.27■□□□□ 0.04
TMEM260-203ENST00000539559 COX6B1P14854 86 aa15.27■□□□□ 0.04
TMEM260-203ENST00000539559 KLK9Q2XQG4 91 aa15.27■□□□□ 0.04
TMEM260-203ENST00000539559 Q6ZS46 218 aa15.27■□□□□ 0.04
TMEM260-203ENST00000539559 NFE4Q86UQ8 179 aa15.27■□□□□ 0.04
TMEM260-203ENST00000539559 KLK9Q9UKQ9 250 aa15.27■□□□□ 0.04
TMEM260-203ENST00000539559 CFAP46Q8IYW2 2715 aa15.27■□□□□ 0.03
TMEM260-203ENST00000539559 IGSF10Q6WRI0 2623 aa15.27■□□□□ 0.03
TMEM260-203ENST00000539559 LY6EQ16553 131 aa15.26■□□□□ 0.03
TMEM260-203ENST00000539559 SOCS3O14543 225 aa15.26■□□□□ 0.03
TMEM260-203ENST00000539559 CRYBG3Q68DQ2 2970 aa15.26■□□□□ 0.03
TMEM260-203ENST00000539559 IGLV4-69A0A075B6H9 119 aa15.25■□□□□ 0.03
TMEM260-203ENST00000539559 TSPEAR-AS2P59090 65 aa15.25■□□□□ 0.03
TMEM260-203ENST00000539559 LMO4P61968 165 aa15.25■□□□□ 0.03
TMEM260-203ENST00000539559 CFAP126Q5VTH2 177 aa15.25■□□□□ 0.03
TMEM260-203ENST00000539559 ABCA2Q9BZC7 2435 aa15.25■□□□□ 0.03
TMEM260-203ENST00000539559 SYT8Q8NBV8 401 aa15.24■□□□□ 0.03
TMEM260-203ENST00000539559 LINC01619G3V211 115 aa15.24■□□□□ 0.03
TMEM260-203ENST00000539559 DLX4Q92988 240 aaPredicted RBP15.24■□□□□ 0.03
TMEM260-203ENST00000539559 LENEPQ9Y5L5 61 aa15.24■□□□□ 0.03
TMEM260-203ENST00000539559 F5H697 171 aa15.23■□□□□ 0.03
TMEM260-203ENST00000539559 FOXI1Q12951 378 aa15.23■□□□□ 0.03
TMEM260-203ENST00000539559 FHL3Q13643 280 aa15.23■□□□□ 0.03
TMEM260-203ENST00000539559 UBE2D1P51668 147 aa15.23■□□□□ 0.03
TMEM260-203ENST00000539559 OVOL1O14753 267 aa15.22■□□□□ 0.03
TMEM260-203ENST00000539559 TMEM170BQ5T4T1 132 aa15.22■□□□□ 0.03
TMEM260-203ENST00000539559 LINC00315P59091 139 aa15.22■□□□□ 0.03
TMEM260-203ENST00000539559 OPRPNQ99935 248 aaPredicted RBP15.22■□□□□ 0.03
TMEM260-203ENST00000539559 CD7P09564 240 aa15.21■□□□□ 0.03
TMEM260-203ENST00000539559 FAM74A4Q5TZK3 123 aa15.21■□□□□ 0.03
TMEM260-203ENST00000539559 ATP6V0BQ99437 205 aa15.21■□□□□ 0.03
TMEM260-203ENST00000539559 C1QTNF4Q9BXJ3 329 aa15.21■□□□□ 0.03
TMEM260-203ENST00000539559 A0A0J9YY99 117 aa15.21■□□□□ 0.03
TMEM260-203ENST00000539559 MOB4Q9Y3A3 225 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms