RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 Q6Q795 121 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 ZNF843Q8N446 348 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 FAM216BQ8N7L0 139 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 PRR26Q8N8Z3 221 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 SLC50A1Q9BRV3 221 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 TMEM133Q9H2Q1 129 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 SIGLEC9Q9Y336 463 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 CACNA1DQ01668 2161 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 RP1L1Q8IWN7 2480 aaPredicted RBP5.06□□□□□ -1.6
USP28-202ENST00000535607 ADGRG4Q8IZF6 3080 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 CACNA1BQ00975 2339 aa5.06□□□□□ -1.6
USP28-202ENST00000535607 UBR5O95071 2799 aaPredicted RBP5.05□□□□□ -1.6
USP28-202ENST00000535607 INTS1Q8N201 2190 aaKnown RBP5.05□□□□□ -1.6
USP28-202ENST00000535607 FAM208BQ5VWN6 2430 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 IGKV2D-26A0A0A0MRZ7 120 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 C16orf97H3BN30 126 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 I3L2K1 104 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 IGHV1-46P01743 117 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 IFITM1P13164 125 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 ATP5G2Q06055 141 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 C10orf55Q5SWW7 151 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 TMEM78Q5T7P6 136 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 NUP37Q8NFH4 326 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 RNASE6Q93091 150 aaKnown RBP5.05□□□□□ -1.6
USP28-202ENST00000535607 SCGB3A1Q96QR1 104 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 C20orf78Q9BR46 151 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 TMEM126AQ9H061 195 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 MRPL35Q9NZE8 188 aaKnown RBP5.05□□□□□ -1.6
USP28-202ENST00000535607 MRPL36Q9P0J6 103 aaKnown RBP5.05□□□□□ -1.6
USP28-202ENST00000535607 ZFYVE26Q68DK2 2539 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 RAI1Q7Z5J4 1906 aaPredicted RBP5.05□□□□□ -1.6
USP28-202ENST00000535607 ZGRF1Q86YA3 2104 aa5.05□□□□□ -1.6
USP28-202ENST00000535607 ZNF815PA8K554 130 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 E7EUB6 86 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 SMKR1H3BMG3 65 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 NDUFA3O95167 84 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 CRYGBP07316 175 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 COL8A2P25067 703 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 HLA-DMBP28068 263 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 UBE2D3P61077 147 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 UBE2D2P62837 147 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 AMTNQ6UX39 209 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 IL17RELQ6ZVW7 336 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 SBSPONQ8IVN8 264 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 ZNF491Q8N8L2 437 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 RNF185Q96GF1 192 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 SELENOKQ9Y6D0 94 aa5.04□□□□□ -1.6
USP28-202ENST00000535607 RELNP78509 3460 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.03□□□□□ -1.6
USP28-202ENST00000535607 IGHV1-69DA0A0B4J2H0 117 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 H3BVH4 76 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 FCN3O75636 299 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 IGKV1-17P01599 117 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 MT-ATP8P03928 68 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 UBE2D1P51668 147 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 SEC61BP60468 96 aaKnown RBP5.03□□□□□ -1.6
USP28-202ENST00000535607 OR10J6PQ8NGY7 276 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 ITLN2Q8WWU7 325 aaPredicted RBP5.03□□□□□ -1.6
USP28-202ENST00000535607 TOMM6Q96B49 74 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 MRPL53Q96EL3 112 aaKnown RBP5.03□□□□□ -1.6
USP28-202ENST00000535607 TIMD4Q96H15 378 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 FBXL15Q9H469 300 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 KAAG1Q9UBP8 84 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 PRO1854Q9UHT4 67 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 CHD6Q8TD26 2715 aa5.03□□□□□ -1.6
USP28-202ENST00000535607 IGHV4-4A0A075B6R2 117 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 TRAV8-2A0A0B4J237 113 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 M0R381 172 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 MRPS12O15235 138 aaKnown RBP5.02□□□□□ -1.61
USP28-202ENST00000535607 IGHG4P01861 327 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 LGALS1P09382 135 aaKnown RBP5.02□□□□□ -1.61
USP28-202ENST00000535607 IGHV1-8P0DP01 117 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 CCL3L1P16619 93 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 XGP55808 180 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 NDUFV3P56181 108 aaKnown RBP5.02□□□□□ -1.61
USP28-202ENST00000535607 FXYD7P58549 80 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 ATXN8Q156A1 80 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 TMEM155Q4W5P6 130 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 SPANXN1Q5VSR9 72 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 MORN3Q6PF18 240 aaPredicted RBP5.02□□□□□ -1.61
USP28-202ENST00000535607 C9orf47Q6ZRZ4 202 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 MAPKAPK5-AS1Q8N8E1 139 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 TMEM141Q96I45 108 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 SMIM2Q9BVW6 85 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 UFC1Q9Y3C8 167 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 ANKHD1Q8IWZ3 2542 aaKnown RBP5.02□□□□□ -1.61
USP28-202ENST00000535607 ZNF462Q96JM2 2506 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 DOPEY1Q5JWR5 2465 aa5.02□□□□□ -1.61
USP28-202ENST00000535607 HIVEP3Q5T1R4 2406 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 IGLV2-18A0A075B6J9 118 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 IGKV2-40A0A087WW87 121 aaPredicted RBP5.01□□□□□ -1.61
USP28-202ENST00000535607 IGHV3-21A0A0B4J1V1 117 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 TRAV8-4A0A0B4J246 113 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 IGHV1-3A0A0C4DH29 117 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 CENPVL3A0A0U1RRI6 287 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 TMEM178BH3BS89 294 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 M0R3E3 92 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 IGKV2D-40P01614 121 aaPredicted RBP5.01□□□□□ -1.61
USP28-202ENST00000535607 PRB1P04280 392 aa5.01□□□□□ -1.61
USP28-202ENST00000535607 COX6CP09669 75 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 805.7 ms