RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 RS1O15537 224 aa10.97□□□□□ -0.65
CLSTN3-204ENST00000535313 TIRAPP58753 221 aa10.97□□□□□ -0.65
CLSTN3-204ENST00000535313 CFAP126Q5VTH2 177 aa10.97□□□□□ -0.65
CLSTN3-204ENST00000535313 CDPF1Q6NVV7 123 aa10.97□□□□□ -0.65
CLSTN3-204ENST00000535313 SCRT2Q9NQ03 307 aa10.97□□□□□ -0.65
CLSTN3-204ENST00000535313 C11orf21Q9P2W6 132 aa10.97□□□□□ -0.65
CLSTN3-204ENST00000535313 A0A0D9SG52 128 aa10.96□□□□□ -0.65
CLSTN3-204ENST00000535313 RHOHQ15669 191 aa10.96□□□□□ -0.65
CLSTN3-204ENST00000535313 SLC25A29Q8N8R3 303 aa10.96□□□□□ -0.65
CLSTN3-204ENST00000535313 C9orf85Q96MD7 179 aa10.96□□□□□ -0.65
CLSTN3-204ENST00000535313 A0A087WTM6 91 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 TRAV8-6A0A0B4J262 113 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 IGHV3-38A0A0C4DH36 116 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 CTXND1A0A1B0GTU2 59 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 TRBV6-4A0A1B0GX49 114 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 IFNA7P01567 189 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 NKX2-5P52952 324 aaPredicted RBP10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 ZNF726P1Q15940 193 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 DPPA3Q6W0C5 159 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 PTH2Q96A98 100 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 BOLA1Q9Y3E2 137 aa10.95□□□□□ -0.66
CLSTN3-204ENST00000535313 IGHV3-73A0A0B4J1V6 119 aa10.94□□□□□ -0.66
CLSTN3-204ENST00000535313 S100A4P26447 101 aaKnown RBP10.94□□□□□ -0.66
CLSTN3-204ENST00000535313 FUSP35637 526 aaKnown RBP eCLIP10.94□□□□□ -0.66
CLSTN3-204ENST00000535313 ZNF506Q5JVG8 444 aa10.94□□□□□ -0.66
CLSTN3-204ENST00000535313 AKR1C8PQ5T2L2 129 aa10.94□□□□□ -0.66
CLSTN3-204ENST00000535313 LINC00479Q96M42 142 aa10.94□□□□□ -0.66
CLSTN3-204ENST00000535313 TRAV34A0A0B4J273 112 aa10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 PGPEP1LA6NFU8 196 aa10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 MGST1P10620 155 aaKnown RBP10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 UBE2G2P60604 165 aa10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 LINC01556Q5JQF7 62 aa10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 OR10J3Q5JRS4 329 aa10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 NKX6-2Q9C056 277 aaPredicted RBP10.93□□□□□ -0.66
CLSTN3-204ENST00000535313 KANTRA0A1W2PQU2 76 aa10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 FABP5P3A8MUU1 101 aa10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 PEX7O00628 323 aa10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 RNASE3P12724 160 aaKnown RBP10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 STOML3Q8TAV4 291 aa10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 ZNF471Q9BX82 626 aaPredicted RBP10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 ARL2-SNX15V9GYD0 113 aa10.92□□□□□ -0.66
CLSTN3-204ENST00000535313 PSCAO43653 123 aa10.91□□□□□ -0.66
CLSTN3-204ENST00000535313 ASIPP42127 132 aa10.91□□□□□ -0.66
CLSTN3-204ENST00000535313 FGF8P55075 233 aaPredicted RBP10.91□□□□□ -0.66
CLSTN3-204ENST00000535313 HIST1H2BAQ96A08 127 aa10.91□□□□□ -0.66
CLSTN3-204ENST00000535313 IGKV3D-20A0A0C4DH25 116 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 FAM74A7A6NL05 159 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 A8MWV9 139 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 FHITP49789 147 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 PIK3CD-AS1Q5SR53 167 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 LELP1Q5T871 98 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 Q86TA4 180 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 ATP6V0E2Q8NHE4 81 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 GTSF1LQ9H1H1 148 aa10.9□□□□□ -0.66
CLSTN3-204ENST00000535313 IBA57-AS1B1ANH7 110 aa10.89□□□□□ -0.67
CLSTN3-204ENST00000535313 PFDN1O60925 122 aa10.89□□□□□ -0.67
CLSTN3-204ENST00000535313 ZFP2Q6ZN57 461 aa10.89□□□□□ -0.67
CLSTN3-204ENST00000535313 PARLQ9H300 379 aa10.89□□□□□ -0.67
CLSTN3-204ENST00000535313 MAP1LC3B2A6NCE7 125 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 B4DEV8 164 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 IGHV3-30P01768 117 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 IGHV3-33P01772 117 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 SEC11BP0C7V7 166 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 IGHV3-30-3P0DP02 117 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 IGHV3-30-5P0DP03 117 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 MAP1LC3BQ9GZQ8 125 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 ZFP30Q9Y2G7 519 aa10.88□□□□□ -0.67
CLSTN3-204ENST00000535313 EPM2AB3EWF7 344 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 GCSHP23434 173 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 KRTAP10-1P60331 282 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 UBE2G1P62253 170 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 SYT8Q8NBV8 401 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 Q9HAA7 133 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 IL36BQ9NZH7 164 aa10.87□□□□□ -0.67
CLSTN3-204ENST00000535313 GAGE12JA6NER3 117 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 H3BVH4 76 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 TPT1P13693 172 aaKnown RBP10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 GAGE1Q13065 139 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 GAGE4Q13068 117 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 GAGE5Q13069 117 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 GAGE13Q4V321 117 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 FAM162BQ5T6X4 162 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 Q6ZSN1 163 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 SLC51BQ86UW2 128 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 ZC2HC1AQ96GY0 325 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 FMC1Q96HJ9 113 aa10.86□□□□□ -0.67
CLSTN3-204ENST00000535313 KRBOX1C9JBD0 128 aa10.85□□□□□ -0.67
CLSTN3-204ENST00000535313 M0R036 132 aa10.85□□□□□ -0.67
CLSTN3-204ENST00000535313 RHODO00212 210 aa10.85□□□□□ -0.67
CLSTN3-204ENST00000535313 XGP55808 180 aa10.85□□□□□ -0.67
CLSTN3-204ENST00000535313 CST9LP1Q5W188 147 aa10.85□□□□□ -0.67
CLSTN3-204ENST00000535313 TCEAL7Q9BRU2 100 aa10.85□□□□□ -0.67
CLSTN3-204ENST00000535313 IGLV5-52A0A0A0MRZ9 124 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 LRCOL1A6NCL2 159 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 SH2D1AO60880 128 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 ARMS2P0C7Q2 107 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 CRIP1P50238 77 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 LAGE3Q14657 143 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 DNLZQ5SXM8 178 aa10.84□□□□□ -0.67
CLSTN3-204ENST00000535313 DMRTA1Q5VZB9 504 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms