RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TRGV11A0A075B6L2 103 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 H3BVH4 76 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 GNRH2O43555 120 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 DEFA6Q01524 100 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 SPANXN1Q5VSR9 72 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 LINC00467Q9BRT7 94 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 SCRT2Q9NQ03 307 aa15.54■□□□□ 0.08
VPS28-212ENST00000530836 PRB2P02812 416 aaPredicted RBP15.53■□□□□ 0.08
VPS28-212ENST00000530836 MORN3Q6PF18 240 aaPredicted RBP15.53■□□□□ 0.08
VPS28-212ENST00000530836 PHLDA3Q9Y5J5 127 aa15.53■□□□□ 0.08
VPS28-212ENST00000530836 C5orf52A6NGY3 159 aa15.52■□□□□ 0.08
VPS28-212ENST00000530836 NDUFA6P56556 154 aa15.52■□□□□ 0.08
VPS28-212ENST00000530836 SMIM15Q7Z3B0 74 aa15.52■□□□□ 0.08
VPS28-212ENST00000530836 TMEM256Q8N2U0 113 aa15.52■□□□□ 0.08
VPS28-212ENST00000530836 TMEM191AQ9H0A3 160 aa15.52■□□□□ 0.08
VPS28-212ENST00000530836 RNASE3P12724 160 aaKnown RBP15.51■□□□□ 0.07
VPS28-212ENST00000530836 C1QTNF4Q9BXJ3 329 aa15.51■□□□□ 0.07
VPS28-212ENST00000530836 COA6Q5JTJ3 125 aaKnown RBP15.5■□□□□ 0.07
VPS28-212ENST00000530836 OR10AG1Q8NH19 301 aa15.5■□□□□ 0.07
VPS28-212ENST00000530836 LOC102724200A0A096LPH7 203 aaPredicted RBP15.5■□□□□ 0.07
VPS28-212ENST00000530836 IGHV3-16A0A0C4DH30 117 aa15.5■□□□□ 0.07
VPS28-212ENST00000530836 MUC21A0A0G2JKD1 596 aa15.5■□□□□ 0.07
VPS28-212ENST00000530836 MUC21A0A140T8X8 626 aa15.5■□□□□ 0.07
VPS28-212ENST00000530836 SNRPEP62304 92 aaKnown RBP15.5■□□□□ 0.07
VPS28-212ENST00000530836 Q8N1Y9 231 aa15.5■□□□□ 0.07
VPS28-212ENST00000530836 SSTP61278 116 aa15.49■□□□□ 0.07
VPS28-212ENST00000530836 OR10J3Q5JRS4 329 aa15.49■□□□□ 0.07
VPS28-212ENST00000530836 DMRTA1Q5VZB9 504 aa15.49■□□□□ 0.07
VPS28-212ENST00000530836 FAM104BQ5XKR9 115 aa15.49■□□□□ 0.07
VPS28-212ENST00000530836 CBY3A6NI87 242 aa15.48■□□□□ 0.07
VPS28-212ENST00000530836 RBMY1A1P0DJD3 496 aaKnown RBP15.48■□□□□ 0.07
VPS28-212ENST00000530836 RBMY1CP0DJD4 496 aa15.48■□□□□ 0.07
VPS28-212ENST00000530836 Q0VG73 95 aa15.48■□□□□ 0.07
VPS28-212ENST00000530836 RBMY1FQ15415 496 aaKnown RBP15.48■□□□□ 0.07
VPS28-212ENST00000530836 KIAA1644Q3SXP7 199 aa15.48■□□□□ 0.07
VPS28-212ENST00000530836 TIMM8BQ9Y5J9 83 aaPredicted RBP15.48■□□□□ 0.07
VPS28-212ENST00000530836 LOC105371267A0A1B0GV96 52 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 NXPH4O95158 308 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 SRIP30626 198 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 C9orf85Q96MD7 179 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 LINC01587Q99440 93 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 WFDC10AQ9H1F0 79 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 MSRB1Q9NZV6 116 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 XCL2Q9UBD3 114 aa15.47■□□□□ 0.07
VPS28-212ENST00000530836 UBE2CO00762 179 aa15.46■□□□□ 0.07
VPS28-212ENST00000530836 HOXA5P20719 270 aa15.46■□□□□ 0.07
VPS28-212ENST00000530836 DEFB125Q8N687 156 aa15.46■□□□□ 0.07
VPS28-212ENST00000530836 ALKBH7Q9BT30 221 aaPredicted RBP15.46■□□□□ 0.07
VPS28-212ENST00000530836 TP53TG3Q9ULZ0 132 aa15.46■□□□□ 0.07
VPS28-212ENST00000530836 SYT8Q8NBV8 401 aa15.46■□□□□ 0.06
VPS28-212ENST00000530836 K7EIL1 84 aa15.45■□□□□ 0.06
VPS28-212ENST00000530836 M0R381 172 aa15.45■□□□□ 0.06
VPS28-212ENST00000530836 TMEM208Q9BTX3 173 aa15.45■□□□□ 0.06
VPS28-212ENST00000530836 PPBPP02775 128 aa15.44■□□□□ 0.06
VPS28-212ENST00000530836 RPL35AP18077 110 aaKnown RBP15.44■□□□□ 0.06
VPS28-212ENST00000530836 AMN1Q8IY45 258 aa15.44■□□□□ 0.06
VPS28-212ENST00000530836 MDFICQ9P1T7 246 aa15.44■□□□□ 0.06
VPS28-212ENST00000530836 GOLT1BQ9Y3E0 138 aa15.44■□□□□ 0.06
VPS28-212ENST00000530836 AP1S3Q96PC3 154 aa15.43■□□□□ 0.06
VPS28-212ENST00000530836 ZNF415Q09FC8 603 aa15.43■□□□□ 0.06
VPS28-212ENST00000530836 BAGE3Q86Y29 109 aa15.43■□□□□ 0.06
VPS28-212ENST00000530836 C1orf158Q8N1D5 194 aa15.43■□□□□ 0.06
VPS28-212ENST00000530836 U3KQK5 164 aa15.43■□□□□ 0.06
VPS28-212ENST00000530836 RAB4AP20338 218 aa15.42■□□□□ 0.06
VPS28-212ENST00000530836 EVI2AP22794 236 aa15.42■□□□□ 0.06
VPS28-212ENST00000530836 PIK3CD-AS1Q5SR53 167 aa15.42■□□□□ 0.06
VPS28-212ENST00000530836 ORMDL3Q8N138 153 aa15.42■□□□□ 0.06
VPS28-212ENST00000530836 CSTL1Q9H114 145 aa15.42■□□□□ 0.06
VPS28-212ENST00000530836 GIG44P09565 113 aaPredicted RBP15.41■□□□□ 0.06
VPS28-212ENST00000530836 HTN1P15515 57 aa15.41■□□□□ 0.06
VPS28-212ENST00000530836 MRPL51Q4U2R6 128 aaKnown RBP15.41■□□□□ 0.06
VPS28-212ENST00000530836 C18orf32Q8TCD1 76 aa15.41■□□□□ 0.06
VPS28-212ENST00000530836 MRAPQ8TCY5 172 aa15.41■□□□□ 0.06
VPS28-212ENST00000530836 PTH2Q96A98 100 aa15.41■□□□□ 0.06
VPS28-212ENST00000530836 RNF185Q96GF1 192 aa15.4■□□□□ 0.06
VPS28-212ENST00000530836 SPXQ9BT56 116 aa15.4■□□□□ 0.06
VPS28-212ENST00000530836 DPH3P1Q9H4G8 78 aa15.4■□□□□ 0.06
VPS28-212ENST00000530836 LAMTOR2Q9Y2Q5 125 aa15.4■□□□□ 0.06
VPS28-212ENST00000530836 CKS2P33552 79 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 KIR2DL5BA0A0G2JN68 375 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 KIR2DL5BA0A0G2JPC4 375 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 SMIM17P0DL12 118 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 S100A2P29034 98 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 DEFB121Q5J5C9 76 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 KIR2DL5AQ8N109 375 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 HIST3H2BBQ8N257 126 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 CSNK1G2-AS1Q8NCQ2 148 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 KIR2DL5BQ8NHK3 375 aa15.39■□□□□ 0.05
VPS28-212ENST00000530836 D6R8Y8 96 aa15.38■□□□□ 0.05
VPS28-212ENST00000530836 ESDP10768 282 aa15.38■□□□□ 0.05
VPS28-212ENST00000530836 NDUFAF3Q9BU61 184 aa15.38■□□□□ 0.05
VPS28-212ENST00000530836 C11orf72Q8NBR9 251 aa15.37■□□□□ 0.05
VPS28-212ENST00000530836 MRAP2Q96G30 205 aa15.37■□□□□ 0.05
VPS28-212ENST00000530836 PRELID3AQ96N28 172 aa15.37■□□□□ 0.05
VPS28-212ENST00000530836 RCHY1Q96PM5 261 aa15.37■□□□□ 0.05
VPS28-212ENST00000530836 M0R2P5 195 aa15.36■□□□□ 0.05
VPS28-212ENST00000530836 APOC4P55056 127 aa15.36■□□□□ 0.05
VPS28-212ENST00000530836 ZNF876PQ49A33 203 aa15.36■□□□□ 0.05
VPS28-212ENST00000530836 ZNF705AQ6ZN79 300 aaPredicted RBP15.36■□□□□ 0.05
VPS28-212ENST00000530836 TMEM263Q8WUH6 116 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms