RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 LYZL6O75951 148 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 GRPP07492 148 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 WT1P19544 449 aaPredicted RBP4.42□□□□□ -1.7
CD44-225ENST00000527326 CRIP1P50238 77 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 HOXA4Q00056 320 aaPredicted RBP4.42□□□□□ -1.7
CD44-225ENST00000527326 CD164Q04900 197 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 ERCC8Q13216 396 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 CDSNQ15517 529 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 C16orf47Q6ZP98 133 aaPredicted RBP4.42□□□□□ -1.7
CD44-225ENST00000527326 LINC01561Q8N1V8 128 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 TMEM243Q9BU79 118 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 C16orf95Q9H693 158 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 PROK2Q9HC23 129 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 GNG12Q9UBI6 72 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 SLC25A15Q9Y619 301 aa4.42□□□□□ -1.7
CD44-225ENST00000527326 CFAP47Q6ZTR5 3102 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 TRIOO75962 3097 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 IGHV3-43A0A0B4J1X8 118 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 IGHV1-69DA0A0B4J2H0 117 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 TMEM89A2RUT3 159 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 H7C2G1 150 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 BCE1O60756 84 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 SCRG1O75711 98 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 IGHG2P01859 326 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 PATE4P0C8F1 98 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 IGHV3-43DP0DP04 118 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 LIFP15018 202 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 TIRAPP58753 221 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 LINC00205P59089 165 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 PMAIP1Q13794 54 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 RPL39P5Q59GN2 51 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 PRSS33Q8NF86 280 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 BRK1Q8WUW1 75 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 VSIG2Q96IQ7 327 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 TIMM21Q9BVV7 248 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 SMIM2Q9BVW6 85 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 FSCN3Q9NQT6 498 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 CHD8Q9HCK8 2581 aa4.41□□□□□ -1.7
CD44-225ENST00000527326 PTPRZ1P23471 2315 aaPredicted RBP4.4□□□□□ -1.7
CD44-225ENST00000527326 TPRP12270 2363 aaKnown RBP4.4□□□□□ -1.7
CD44-225ENST00000527326 MYO7AQ13402 2215 aa4.4□□□□□ -1.7
CD44-225ENST00000527326 TRBV19A0A075B6N1 114 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 IGHV3-15A0A0B4J1V0 119 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 DEFB108AA8MXU0 73 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 IQCF6A8MYZ5 107 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 USP17L23D6RBM5 183 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 M0R3E3 92 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 LEPROTO15243 131 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 CXCL13O43927 109 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 GFERP55789 205 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 DLX1P56177 255 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 TMEM30BQ3MIR4 351 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 FAM222AQ5U5X8 452 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 MUSTN1Q8IVN3 82 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 RNF182Q8N6D2 247 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 CD177Q8N6Q3 437 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 NRACQ8N912 160 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 KLHL30-AS1Q8NEE0 82 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 WFDC11Q8NEX6 87 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 KLF14Q8TD94 323 aaPredicted RBP4.4□□□□□ -1.71
CD44-225ENST00000527326 NDUFA4L2Q9NRX3 87 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 BEX4Q9NWD9 120 aaPredicted RBP4.4□□□□□ -1.71
CD44-225ENST00000527326 CHD6Q8TD26 2715 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 NCOR2Q9Y618 2525 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 FAM186AA6NE01 2351 aa4.4□□□□□ -1.71
CD44-225ENST00000527326 ATRXP46100 2492 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 RBMY1BA6NDE4 496 aaKnown RBP4.39□□□□□ -1.71
CD44-225ENST00000527326 RBMY1EA6NEQ0 496 aaKnown RBP4.39□□□□□ -1.71
CD44-225ENST00000527326 PPP1R17O96001 155 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 RBMY1DP0C7P1 496 aaKnown RBP4.39□□□□□ -1.71
CD44-225ENST00000527326 RBMY1A1P0DJD3 496 aaKnown RBP4.39□□□□□ -1.71
CD44-225ENST00000527326 RBMY1CP0DJD4 496 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 TNFRSF4P43489 277 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 PDE6HQ13956 83 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 FHL2Q14192 279 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 RBMY1FQ15415 496 aaKnown RBP4.39□□□□□ -1.71
CD44-225ENST00000527326 RHOHQ15669 191 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 C9orf139Q6ZV77 190 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 NUP37Q8NFH4 326 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 TMEM141Q96I45 108 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 AMELXQ99217 191 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 SLC50A1Q9BRV3 221 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 TET2Q6N021 2002 aaPredicted RBP4.39□□□□□ -1.71
CD44-225ENST00000527326 WDR87Q6ZQQ6 2873 aa4.39□□□□□ -1.71
CD44-225ENST00000527326 IGLV4-69A0A075B6H9 119 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 TRAV26-2A0A0B4J265 109 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 A0A0U1RQV1 116 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 A8MZ25 164 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 PATE3B3GLJ2 98 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 EGR2P11161 476 aaPredicted RBP4.38□□□□□ -1.71
CD44-225ENST00000527326 ATP5EP2Q5VTU8 51 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 PVRIGQ6DKI7 326 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 C2orf66Q6UXQ4 117 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 WDR86Q86TI4 376 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 PRR15Q8IV56 129 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 Q8N1X5 172 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 PATE1Q8WXA2 126 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 EEF1AKMT3Q96AZ1 226 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 WWC2-AS2Q96NR7 200 aa4.38□□□□□ -1.71
CD44-225ENST00000527326 SRXN1Q9BYN0 137 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms