RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 KLF5Q13887 457 aaPredicted RBP9.14□□□□□ -0.95
SYNPO-204ENST00000519664 OR11H6Q8NGC7 330 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 CFHR4Q92496 578 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 IGHV4-38-2P0DP08 117 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 LINC00322Q6ZN03 302 aaPredicted RBP9.14□□□□□ -0.95
SYNPO-204ENST00000519664 ZNF747Q9BV97 191 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 PGPEP1Q9NXJ5 209 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 CENPVL3A0A0U1RRI6 287 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 CHCHD5Q9BSY4 110 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 TTTY13Q9BZ97 58 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 CENPEQ02224 2701 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 IGKV1D-37A0A075B6S9 117 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 PLNP26678 52 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 C1orf122Q6ZSJ8 110 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 PCP2Q8IVA1 136 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 C8orf31Q8N9H6 132 aa9.14□□□□□ -0.95
SYNPO-204ENST00000519664 TRAV13-1A0A0B4J241 112 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 H3BMG7 143 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 IGHV4-59P01825 116 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 KLF12Q9Y4X4 402 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 DNAL4O96015 105 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 LINC01356Q8N9X3 169 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 IGLV11-55A0A075B6I3 123 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 SDHAF1A6NFY7 115 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 PRB1P04280 392 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 SLC25A16P16260 332 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 LGALS9BQ3B8N2 356 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 LGALS9CQ6DKI2 356 aa9.13□□□□□ -0.95
SYNPO-204ENST00000519664 WIPF2Q8TF74 440 aaPredicted RBP9.13□□□□□ -0.95
SYNPO-204ENST00000519664 DEFB136Q30KP8 78 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 TCTEX1D4Q5JR98 221 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 SMIM20Q8N5G0 67 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 C11orf68Q9H3H3 251 aaKnown RBP9.12□□□□□ -0.95
SYNPO-204ENST00000519664 IGHV3-38A0A0C4DH36 116 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 K7EMI3 77 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 Q8N9W7 124 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 CFHR3Q02985 330 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 Q8N8P6 123 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 SCRT2Q9NQ03 307 aa9.12□□□□□ -0.95
SYNPO-204ENST00000519664 TRBV7-9A0A0J9YWB2 115 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 K7ERJ3 54 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 IGHV4-30-2A0A087WSY4 118 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 CTRLP40313 264 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 DSCR9P59020 149 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 VPS13AQ96RL7 3174 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 LINC01548A6NM66 108 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 IFITM1P13164 125 aa9.11□□□□□ -0.95
SYNPO-204ENST00000519664 EIF4EBP1Q13541 118 aaPredicted RBP9.11□□□□□ -0.95
SYNPO-204ENST00000519664 RNASE13Q5GAN3 156 aaKnown RBP9.11□□□□□ -0.95
SYNPO-204ENST00000519664 NDUFA4O00483 81 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 LRP4O75096 1905 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 DEFB112Q30KQ8 113 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 IGF2-ASQ6U949 168 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 BUB3O43684 328 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 Q71RC1 249 aaPredicted RBP9.1□□□□□ -0.95
SYNPO-204ENST00000519664 FANCD2OSQ96PS1 177 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 SMIM2Q9BVW6 85 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 ERG28Q9UKR5 140 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 DEFB130BP0DP73 79 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 DEFB130AP0DP74 79 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 AMTNQ6UX39 209 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 TP73-AS1Q9UF72 201 aa9.1□□□□□ -0.95
SYNPO-204ENST00000519664 IGLV2-8P01709 118 aa9.09□□□□□ -0.95
SYNPO-204ENST00000519664 C1QTNF4Q9BXJ3 329 aa9.09□□□□□ -0.95
SYNPO-204ENST00000519664 SH2D6Q7Z4S9 175 aa9.09□□□□□ -0.95
SYNPO-204ENST00000519664 CLUHP3Q96NS8 147 aa9.09□□□□□ -0.95
SYNPO-204ENST00000519664 Q96MF0 132 aa9.09□□□□□ -0.95
SYNPO-204ENST00000519664 TRBV20-1A0A075B6N2 111 aa9.09□□□□□ -0.96
SYNPO-204ENST00000519664 ADARB2-AS1A8MUL3 147 aa9.09□□□□□ -0.96
SYNPO-204ENST00000519664 GDF5OSQ5U4N7 250 aa9.08□□□□□ -0.96
SYNPO-204ENST00000519664 TMEM190Q8WZ59 177 aa9.08□□□□□ -0.96
SYNPO-204ENST00000519664 RPL39LQ96EH5 51 aaKnown RBP9.08□□□□□ -0.96
SYNPO-204ENST00000519664 PRADC1Q9BSG0 188 aa9.08□□□□□ -0.96
SYNPO-204ENST00000519664 ZNF415Q09FC8 603 aa9.08□□□□□ -0.96
SYNPO-204ENST00000519664 CEND1Q8N111 149 aa9.08□□□□□ -0.96
SYNPO-204ENST00000519664 IGHV7-4-1A0A0J9YVY3 117 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 RPL36AP83881 106 aaKnown RBP9.07□□□□□ -0.96
SYNPO-204ENST00000519664 TAL2Q16559 108 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 NPBQ8NG41 125 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 RPL36ALQ969Q0 106 aaKnown RBP9.07□□□□□ -0.96
SYNPO-204ENST00000519664 BOD1L2Q8IYS8 172 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 AJUBAQ96IF1 538 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 CRYGCP07315 174 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 IGHV1OR15-1A0A075B7D0 117 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 TRBV12-3P01733 135 aa9.07□□□□□ -0.96
SYNPO-204ENST00000519664 LINC01549A6NIU2 74 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 LINC00158P58513 81 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 LOXL1Q08397 574 aaPredicted RBP9.06□□□□□ -0.96
SYNPO-204ENST00000519664 WFDC2Q14508 124 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 LINC01545Q5VT33 79 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 C9orf153Q5TBE3 101 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 FOXI2Q6ZQN5 318 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 CITED2Q99967 270 aaPredicted RBP9.06□□□□□ -0.96
SYNPO-204ENST00000519664 TRANK1O15050 2925 aa9.06□□□□□ -0.96
SYNPO-204ENST00000519664 F8VRH5 84 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 UNQ9165/PRO28630Q6UXU0 137 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 C9JAW5 83 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 M0R2P5 195 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 C16orf54Q6UWD8 224 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 TIMM21Q9BVV7 248 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms