RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 NFE4Q86UQ8 179 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 GVQW1Q8N7I0 195 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 C15orf53Q8NAA6 179 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 COPS9Q8WXC6 57 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 C11orf52Q96A22 123 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 DPH3Q96FX2 82 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 NMNAT3Q96T66 252 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 MRPL20Q9BYC9 149 aaKnown RBP4.2□□□□□ -1.74
NUP54-218ENST00000515460 BPESC1Q9GZL8 116 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 RNASE7Q9H1E1 156 aaKnown RBP4.2□□□□□ -1.74
NUP54-218ENST00000515460 PKIGQ9Y2B9 76 aa4.2□□□□□ -1.74
NUP54-218ENST00000515460 PCNX3Q9H6A9 2034 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 PRR14LQ5THK1 2151 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 IGHV4OR15-8A0A075B7B6 117 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 FAM90A7PA6NKC0 464 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 CPSF4LA6NMK7 179 aaKnown RBP4.19□□□□□ -1.74
NUP54-218ENST00000515460 FAM90A22PA8MWA6 464 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 FAM90A12PA8MX19 464 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 FAM90A23PA8MXZ1 464 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 PRAC2D3DTV9 90 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 LY6LH3BQJ8 138 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 SSSCA1O60232 199 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 PDCD6O75340 191 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 PPYP01298 95 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 IGLV1-44P01699 117 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 P0DMU3 169 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 FAM231AP0DMU4 169 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 FAM231CP0DMU5 169 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 HERV-K104P61576 105 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 ARL16Q0P5N6 197 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 LINC01620Q4KN68 170 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 ABCA11PQ4W5N1 156 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 MRPL2Q5T653 305 aaKnown RBP4.19□□□□□ -1.74
NUP54-218ENST00000515460 C1orf140Q5VVS0 124 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 AAED1Q7RTV5 226 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 AMN1Q8IY45 258 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 CEND1Q8N111 149 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 TMEM190Q8WZ59 177 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 CARD19Q96LW7 228 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 Q96M85 177 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 SLC25A2Q9BXI2 301 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 C1QTNF5Q9BXJ0 243 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 LAMTOR3Q9UHA4 124 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 PYGO1Q9Y3Y4 419 aa4.19□□□□□ -1.74
NUP54-218ENST00000515460 LCE6AA0A183 80 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 FAM236DA0A1B0GTK5 79 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 FAM236AA0A1B0GUQ0 79 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 FAM236BA0A1B0GV22 79 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 SMIM27A0A1W2PRY6 76 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 TCRBV4S1A1TA0A5B7 111 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 TMEM14DPA8MWL7 114 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 OOSP1A8MZH6 123 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 NPIPB11E5RHQ5 1161 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 TMEM178BH3BS89 294 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 IGKV3-15P01624 115 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 FAM236CP0DP71 79 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 COL8A2P25067 703 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 RPL13AP40429 203 aaKnown RBP4.18□□□□□ -1.74
NUP54-218ENST00000515460 LEPP41159 167 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 GNB1P62873 340 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 QRFPP83859 136 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 C9orf139Q6ZV77 190 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 LYPD6Q86Y78 171 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 OR5AS1Q8N127 324 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 SLC22A24Q8N4F4 322 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 NUP37Q8NFH4 326 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 CHAC1Q9BUX1 264 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 V9GYV3 84 aa4.18□□□□□ -1.74
NUP54-218ENST00000515460 MALRD1Q5VYJ5 2156 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 TRAV2A0A0B4J234 112 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 TRAV8-2A0A0B4J237 113 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 TRAV13-1A0A0B4J241 112 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 TRAV8-4A0A0B4J246 113 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 C15orf61A6NNL5 157 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 ATOX1O00244 68 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 NDUFB2O95178 105 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 IL4P05112 153 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 CXCL5P42830 114 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 FXYD2P54710 66 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 FOXA3P55318 350 aaPredicted RBP4.17□□□□□ -1.74
NUP54-218ENST00000515460 CLDN17P56750 224 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 LMO4P61968 165 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 ARFRP1Q13795 201 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 C12orf74Q32Q52 190 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 CD164L2Q6UWJ8 174 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 LYZL2Q7Z4W2 148 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 TAF15Q92804 592 aaKnown RBP eCLIP4.17□□□□□ -1.74
NUP54-218ENST00000515460 VSIRQ9H7M9 311 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 ZNF442Q9H7R0 627 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 NHP2Q9NX24 153 aaKnown RBP4.17□□□□□ -1.74
NUP54-218ENST00000515460 GNG12Q9UBI6 72 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 TP73-AS1Q9UF72 201 aa4.17□□□□□ -1.74
NUP54-218ENST00000515460 ALPK2Q86TB3 2170 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 MUC4Q99102 2169 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 RBAKDNA6NC62 111 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 B4DSR2 109 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 PGLYRP1O75594 196 aaPredicted RBP4.16□□□□□ -1.74
NUP54-218ENST00000515460 CST7O76096 145 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 ACYP1P07311 99 aa4.16□□□□□ -1.74
NUP54-218ENST00000515460 CD7P09564 240 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms