RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 MGST2Q99735 147 aa2.43□□□□□ -2.02
NUP54-212ENST00000513248 RNF126Q9BV68 326 aa2.43□□□□□ -2.02
NUP54-212ENST00000513248 BATF3Q9NR55 127 aa2.43□□□□□ -2.02
NUP54-212ENST00000513248 KCNIP2Q9NS61 270 aa2.43□□□□□ -2.02
NUP54-212ENST00000513248 LYRM2Q9NU23 88 aaPredicted RBP2.43□□□□□ -2.02
NUP54-212ENST00000513248 SLC39A9Q9NUM3 307 aa2.43□□□□□ -2.02
NUP54-212ENST00000513248 SORL1Q92673 2214 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 TRAV8-2A0A0B4J237 113 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 A0A1W2PPV4 95 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 IGSF23A1L1A6 192 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 ZNF705FA8MVS1 300 aaPredicted RBP2.42□□□□□ -2.02
NUP54-212ENST00000513248 M0R2N4 97 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 OR7C2O60412 319 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 HIST1H1EP10412 219 aaKnown RBP2.42□□□□□ -2.02
NUP54-212ENST00000513248 CDKN1BP46527 198 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 RPL29P47914 159 aaKnown RBP2.42□□□□□ -2.02
NUP54-212ENST00000513248 TAS2R60P59551 318 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 OR5I1Q13606 314 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 SOHLH1Q5JUK2 328 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 FAM74A1Q5RGS3 127 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 PATE2Q6UY27 113 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 ZNF705AQ6ZN79 300 aaPredicted RBP2.42□□□□□ -2.02
NUP54-212ENST00000513248 IQCF2Q8IXL9 164 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 C1orf158Q8N1D5 194 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 LINC01561Q8N1V8 128 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 TMEM256Q8N2U0 113 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 OR5C1Q8NGR4 320 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 CMTM2Q8TAZ6 248 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 SMIM3Q9BZL3 60 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 NMES1Q9C002 83 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 OR51M1Q9H341 326 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 PPDPFQ9H3Y8 114 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 ZNF331Q9NQX6 463 aaPredicted RBP2.42□□□□□ -2.02
NUP54-212ENST00000513248 APLNQ9ULZ1 77 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 RPH3ALQ9UNE2 315 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 PRELID1Q9Y255 219 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 TIMM8BQ9Y5J9 83 aaPredicted RBP2.42□□□□□ -2.02
NUP54-212ENST00000513248 TNCP24821 2201 aa2.42□□□□□ -2.02
NUP54-212ENST00000513248 COL7A1Q02388 2944 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 IGLV2-18A0A075B6J9 118 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 TRGV2A0A075B6R0 118 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 IGHV1OR15-1A0A075B7D0 117 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 TRAV12-3A0A0B4J271 114 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 LYRM9A8MSI8 78 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 H3BQ15 152 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 H7BYZ3 331 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 SLC17A3O00476 420 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 ZNF861PO60384 105 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 PRM2P04554 102 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 ATP5G1P05496 136 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 GPX1P07203 203 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 OR10J4P0C629 311 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 NBEAP1P0C6P0 100 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 PYYP10082 97 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 RPL12P30050 165 aaKnown RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 RNASE4P34096 147 aaKnown RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 ATP5G3P48201 142 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 CCL18P55774 89 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 TAS2R45P59539 299 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 ERCC8Q13216 396 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 ACOT6Q3I5F7 207 aaPredicted RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 TMEM78Q5T7P6 136 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 AMTNQ6UX39 209 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 ZNF493Q6ZR52 646 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 MIR17HGQ75NE6 70 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 EXOC3-AS1Q8N2X6 119 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 C15orf53Q8NAA6 179 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 PPP1R1CQ8WVI7 109 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 FAM210BQ96KR6 192 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 HYLS1Q96M11 299 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 LINC00477Q96M19 166 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 ATP5SQ99766 215 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 C20orf144Q9BQM9 153 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 NPCDR1Q9BY65 106 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 MRPL32Q9BYC8 188 aaKnown RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 PARD6GQ9BYG4 376 aaPredicted RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 WDR61Q9GZS3 305 aaKnown RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 MED28Q9H204 178 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 NOP10Q9NPE3 64 aaKnown RBP2.41□□□□□ -2.02
NUP54-212ENST00000513248 OR5AC2Q9NZP5 309 aa2.41□□□□□ -2.02
NUP54-212ENST00000513248 HERC1Q15751 4861 aa2.4□□□□□ -2.02
NUP54-212ENST00000513248 TRBV19A0A075B6N1 114 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 IGKV2-40A0A087WW87 121 aaPredicted RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 TRGV1A0A0A0MS02 117 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 C7orf71A4D174 169 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 M0R3E3 92 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 MPC2O95563 127 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 IGKV2D-40P01614 121 aaPredicted RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 SLC25A5P05141 298 aaKnown RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 IGLC2P0DOY2 106 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 RANP62826 216 aaKnown RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 UBE2L3P68036 154 aaKnown RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 ZNF266Q14584 549 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 KHDC3LQ587J8 217 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 GCSAMLQ5JQS6 135 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 INO80EQ8NBZ0 244 aaPredicted RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 ZNF680Q8NEM1 530 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 C7orf33Q8WU49 177 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 TMEM263Q8WUH6 116 aaKnown RBP2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms