RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 Q6ZS49 121 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 ZNRD1Q9P1U0 126 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 SIGLEC9Q9Y336 463 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 SZT2Q5T011 3432 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 K7EMI3 77 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 NDUFC1O43677 76 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 Q8N1Y9 231 aa6.94□□□□□ -1.3
LIMCH1-218ENST00000513024 IGKV1D-17A0A075B6S4 117 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 H3BQ85 93 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 FOXE3Q13461 319 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 DYNAPQ8N1N2 210 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 ZNF561-AS1K7EIQ3 104 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 NDUFB1O75438 58 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 GATA4P43694 442 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 LOXL1Q08397 574 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 LYPD6Q86Y78 171 aa6.93□□□□□ -1.3
LIMCH1-218ENST00000513024 LGALS9O00182 355 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 CLPSP04118 112 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 OPRPNQ99935 248 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 SHANK2-AS3Q9BTD1 123 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 NUP210Q8TEM1 1887 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 TRAV4A0A0B4J268 109 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 FAM110AQ9BQ89 295 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 XIRP2A4UGR9 3374 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 H3BUX3 64 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 SERP2Q8N6R1 65 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 C1orf147Q96MC9 270 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 YLPM1P49750 1951 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 CCDC179H3BU77 68 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 USMG5Q96IX5 58 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 C8orf49Q96NF6 230 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 MLST8Q9BVC4 326 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 Q9H8V8 135 aa6.92□□□□□ -1.3
LIMCH1-218ENST00000513024 TRAV26-2A0A0B4J265 109 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 UPK3BQ9BT76 320 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 REV3LO60673 3130 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 IGHV4-28A0A0C4DH34 117 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 IGKV1-39P01597 117 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 IGKV1D-39P04432 117 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 UBE2AP49459 152 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 TMEM178BH3BS89 294 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 PDE6GP18545 87 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 SPATA12Q7Z6I5 190 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 KIF26AQ9ULI4 1882 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 COL4A6Q14031 1691 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 LINC00694P0DN24 101 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 RHOHQ15669 191 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 IMUPQ9GZP8 106 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 TNCP24821 2201 aa6.91□□□□□ -1.3
LIMCH1-218ENST00000513024 VMO1Q7Z5L0 202 aa6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 IGHV1-69DA0A0B4J2H0 117 aa6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 GAFA1Q96PS6 74 aa6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 BPESC1Q9GZL8 116 aa6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 ZGRF1Q86YA3 2104 aa6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 CHD7Q9P2D1 2997 aa6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 TNRC18O15417 2968 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-218ENST00000513024 COX7CP15954 63 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 HIST2H2BCQ6DN03 193 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 HIST2H2BDQ6DRA6 164 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 LINC00173Q6ZV60 143 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 TMEM61Q8N0U2 210 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 MDS2Q8NDY4 140 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 RNF5Q99942 180 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 UNC80Q8N2C7 3258 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 FANCD2OSQ96PS1 177 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 PRR25Q96S07 402 aa6.9□□□□□ -1.31
LIMCH1-218ENST00000513024 BUB1B-PAK6H3BSN5 160 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 DKK1O94907 266 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 ATP5EP2Q5VTU8 51 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 PIP4P2Q8N4L2 257 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 COX7B2Q8TF08 81 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 IL15RAQ13261 267 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 HIGD2BQ4VC39 106 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 PRR15LQ9BU68 103 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 RHPN1-AS1Q9BWJ2 59 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 DKK4Q9UBT3 224 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 LYPD2Q6UXB3 125 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 BRD3OSQ6XYD6 125 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 TTTY13Q9BZ97 58 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 MALRD1Q5VYJ5 2156 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 PRUNE2Q8WUY3 3088 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 SDIM1Q6ZPB5 146 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 THAP8Q8NA92 274 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 SND1-IT1Q9HBX3 110 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 TMEM14BQ9NUH8 114 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 GTF3C1Q12789 2109 aa6.89□□□□□ -1.31
LIMCH1-218ENST00000513024 LY6HO94772 140 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 C9orf66Q5T8R8 295 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 LECT2O14960 151 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 TCL1BO95988 128 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 UBE2BP63146 152 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 CLEC2BQ92478 149 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 CGB3P0DN86 165 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 FAM120AOSQ5T036 256 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 BDP1A6H8Y1 2624 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 NDUFB8O95169 186 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 C17orf82Q86X59 251 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 GTSF1Q8WW33 167 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 SPG11Q96JI7 2443 aa6.88□□□□□ -1.31
LIMCH1-218ENST00000513024 KIAA1549LQ6ZVL6 1849 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms