RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 CELSR2Q9HCU4 2923 aa8.98□□□□□ -0.97
UBE3D-206ENST00000505226 LINC01619G3V211 115 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 SOCS3O14543 225 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 TSHBP01222 138 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 MGPP08493 103 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 RNASE3P12724 160 aaKnown RBP8.97□□□□□ -0.97
UBE3D-206ENST00000505226 EMP1P54849 157 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 C19orf54Q5BKX5 351 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 SPATA25Q9BR10 227 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 C20orf78Q9BR46 151 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 DPH3P1Q9H4G8 78 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 PGPEP1Q9NXJ5 209 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 SPTAN1Q13813 2472 aaKnown RBP8.97□□□□□ -0.97
UBE3D-206ENST00000505226 IGHV3OR16-10A0A075B7F0 116 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 HOXA3O43365 443 aaPredicted RBP8.97□□□□□ -0.97
UBE3D-206ENST00000505226 DUSP14O95147 198 aaKnown RBP8.97□□□□□ -0.97
UBE3D-206ENST00000505226 SLC25A16P16260 332 aa8.97□□□□□ -0.97
UBE3D-206ENST00000505226 RNASE4P34096 147 aaKnown RBP8.97□□□□□ -0.97
UBE3D-206ENST00000505226 PHLDA3Q9Y5J5 127 aa8.96□□□□□ -0.97
UBE3D-206ENST00000505226 ZNF815PA8K554 130 aa8.96□□□□□ -0.98
UBE3D-206ENST00000505226 S100A4P26447 101 aaKnown RBP8.96□□□□□ -0.98
UBE3D-206ENST00000505226 LINC00315P59091 139 aa8.96□□□□□ -0.98
UBE3D-206ENST00000505226 LMO4P61968 165 aa8.96□□□□□ -0.98
UBE3D-206ENST00000505226 ZFP2Q6ZN57 461 aa8.96□□□□□ -0.98
UBE3D-206ENST00000505226 C9orf139Q6ZV77 190 aa8.96□□□□□ -0.98
UBE3D-206ENST00000505226 ABCA2Q9BZC7 2435 aa8.96□□□□□ -0.98
UBE3D-206ENST00000505226 IGKV3-7A0A075B6H7 116 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 FAM19A4Q96LR4 140 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 LINC00477Q96M19 166 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 JPT2Q9H910 190 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 LENEPQ9Y5L5 61 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 IGLV4-69A0A075B6H9 119 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 TRAV41A0A0B4J266 112 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 TRAV21A0A0B4J279 112 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 LINC01549A6NIU2 74 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 NPFFO15130 113 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 ARL3P36405 182 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 ASIPP42127 132 aa8.95□□□□□ -0.98
UBE3D-206ENST00000505226 C11orf86A6NJI1 115 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 UBE2D1P51668 147 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 NFE4Q86UQ8 179 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 BPESC1Q9GZL8 116 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 KIF25-AS1Q9Y6Z4 181 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 EDN2P20800 178 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 OR10J6PQ8NGY7 276 aa8.94□□□□□ -0.98
UBE3D-206ENST00000505226 MRPL16Q9NX20 251 aaKnown RBP8.94□□□□□ -0.98
UBE3D-206ENST00000505226 TSPAN13O95857 204 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 CD7P09564 240 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 RPL39P62891 51 aaKnown RBP8.93□□□□□ -0.98
UBE3D-206ENST00000505226 CFAP126Q5VTH2 177 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 TSPEAR-AS2P59090 65 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 Q6ZS46 218 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 SVIPQ8NHG7 77 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 WFDC12Q8WWY7 111 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 HIVEP3Q5T1R4 2406 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 IGHV3-11P01762 117 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 FHL3Q13643 280 aa8.93□□□□□ -0.98
UBE3D-206ENST00000505226 IGIPA6NJ69 53 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 NDUFS8O00217 210 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 SCGB1A1P11684 91 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 SRD5A1P18405 259 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 RPL11P62913 178 aaKnown RBP8.92□□□□□ -0.98
UBE3D-206ENST00000505226 SCGB1D4Q6XE38 83 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 PTH2Q96A98 100 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 SCGB2A2Q13296 93 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 BRD3OSQ6XYD6 125 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 POM121L12Q8N7R1 296 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 TP53TG1Q9Y2A0 90 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 J3QR89 54 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 OVOL1O14753 267 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 APOMO95445 188 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 SRSF9Q13242 221 aaKnown RBP eCLIP8.92□□□□□ -0.98
UBE3D-206ENST00000505226 APRG1Q8IVJ8 170 aa8.92□□□□□ -0.98
UBE3D-206ENST00000505226 A0A0J9YY99 117 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 FAM223BA6NKX1 122 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 FOXI1Q12951 378 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 FAM223AQ8IWN6 122 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 PSMB2P49721 201 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 CDIP1Q9H305 208 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 UBTD1Q9HAC8 227 aa8.91□□□□□ -0.98
UBE3D-206ENST00000505226 A0A087WWL8 130 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 LOC107984156A0A0G2JMH3 177 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 UBE2D3P61077 147 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 UBE2D2P62837 147 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 ARL17AQ8IVW1 177 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 ZNRF2Q8NHG8 242 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 NDUFA4O00483 81 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 NXPH4O95158 308 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 NBL1P41271 181 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 POLR2KP53803 58 aaKnown RBP8.9□□□□□ -0.98
UBE3D-206ENST00000505226 MOB4Q9Y3A3 225 aa8.9□□□□□ -0.98
UBE3D-206ENST00000505226 SUMO4Q6EEV6 95 aa8.9□□□□□ -0.99
UBE3D-206ENST00000505226 NDUFA11Q86Y39 141 aa8.9□□□□□ -0.99
UBE3D-206ENST00000505226 DLX4Q92988 240 aaPredicted RBP8.9□□□□□ -0.99
UBE3D-206ENST00000505226 C1QTNF4Q9BXJ3 329 aa8.9□□□□□ -0.99
UBE3D-206ENST00000505226 MED14OSP0DP75 135 aa8.89□□□□□ -0.99
UBE3D-206ENST00000505226 Q5PR19 223 aa8.89□□□□□ -0.99
UBE3D-206ENST00000505226 ZNF418Q8TF45 676 aaPredicted RBP8.89□□□□□ -0.99
UBE3D-206ENST00000505226 AMELXQ99217 191 aa8.89□□□□□ -0.99
UBE3D-206ENST00000505226 IGHV4OR15-8A0A075B7B6 117 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms