RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-231	ENST00000498751	HSPB8	Q9UJY1	196 aa		5.67	□□□□□ -1.5
SYNE1-231	ENST00000498751	KIF25-AS1	Q9Y6Z4	181 aa		5.67	□□□□□ -1.5
SYNE1-231	ENST00000498751	ITPR3	Q14573	2671 aa		5.67	□□□□□ -1.5
SYNE1-231	ENST00000498751	ABCA12	Q86UK0	2595 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	UNC79	Q9P2D8	2635 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	ZFHX3	Q15911	3703 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	LINC01549	A6NIU2	74 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	PCP4L1	A6NKN8	68 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	TNFRSF6B	O95407	300 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	LY6G6D	O95868	133 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	NPY	P01303	97 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	EVI2A	P22794	236 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	LINC00315	P59091	139 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	SPANXN1	Q5VSR9	72 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	RNASEK	Q6P5S7	137 aa	Known RBP	5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	FAM19A2	Q8N3H0	131 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	NRAC	Q8N912	160 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	PRSS3P2	Q8NHM4	247 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	TMEM70	Q9BUB7	260 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	ZNF747	Q9BV97	191 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	TPPP3	Q9BW30	176 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	MAP1LC3A	Q9H492	121 aa		5.66	□□□□□ -1.5
SYNE1-231	ENST00000498751	CELSR1	Q9NYQ6	3014 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	TRGV11	A0A075B6L2	103 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	IGHV3-16	A0A0C4DH30	117 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	TRBV6-5	A0A0K0K1A5	114 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	SYS1-DBNDD2	H3BUS1	97 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751		H3BVH4	76 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	SCGB1D1	O95968	90 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	PRB4	P10163	310 aa	Predicted RBP	5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	CD28	P10747	220 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	S100A4	P26447	101 aa	Known RBP	5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	DDT	P30046	118 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	DEFB1	P60022	68 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	DEFB136	Q30KP8	78 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	LBH	Q53QV2	105 aa	Predicted RBP	5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	LINC01545	Q5VT33	79 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751		Q6ZQT7	251 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	FA2H	Q7L5A8	372 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	NDUFA11	Q86Y39	141 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751		Q8N8P6	123 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	AP1S3	Q96PC3	154 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	MAP6D1	Q9H9H5	199 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	PHLDA3	Q9Y5J5	127 aa		5.65	□□□□□ -1.5
SYNE1-231	ENST00000498751	ZNF469	Q96JG9	3925 aa	Predicted RBP	5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	IGKV3-7	A0A075B6H7	116 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	IGHV1OR15-1	A0A075B7D0	117 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	LINC00587	B1AMM8	73 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	IGLV1-51	P01701	117 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	HBD	P02042	147 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	FCER1G	P30273	86 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	RNASE4	P34096	147 aa	Known RBP	5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	IFI27	P40305	119 aa	Predicted RBP	5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	DEFB131A	P59861	70 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	CTAG1A	P78358	180 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	CD300E	Q496F6	205 aa	Predicted RBP	5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	DYNLRB2	Q8TF09	96 aa		5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	CITED2	Q99967	270 aa	Predicted RBP	5.64	□□□□□ -1.51
SYNE1-231	ENST00000498751	HELZ2	Q9BYK8	2649 aa	Known RBP	5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	CENPE	Q02224	2701 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	ZAN	Q9Y493	2812 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	GNRH2	O43555	120 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	KRTDAP	P60985	99 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	BEAN1	Q3B7T3	259 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	LGALS9B	Q3B8N2	356 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	LCE1D	Q5T752	114 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	LGALS9C	Q6DKI2	356 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	VAMP8	Q9BV40	100 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	MAP1LC3C	Q9BXW4	147 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	TEX15	Q9BXT5	2789 aa		5.63	□□□□□ -1.51
SYNE1-231	ENST00000498751	MXRA5	Q9NR99	2828 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	NBPF19	A0A087WUL8	3843 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	TRAV9-2	A0A087WT02	112 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	TRAV12-3	A0A0B4J271	114 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	CRLF1	O75462	422 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	CD7	P09564	240 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	G0S2	P27469	103 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	TFPI2	P48307	235 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	ODF3L2	Q3SX64	289 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	TRPT1	Q86TN4	253 aa	Known RBP	5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751		Q8N1Y9	231 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	SYT8	Q8NBV8	401 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	RASL10A	Q92737	203 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	MIEN1	Q9BRT3	115 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	SMIM2	Q9BVW6	85 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	C19orf73	Q9NVV2	129 aa		5.62	□□□□□ -1.51
SYNE1-231	ENST00000498751	MUC21	A0A0G2JKD1	596 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	MUC21	A0A140T8X8	626 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	RBMY1B	A6NDE4	496 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	RBMY1E	A6NEQ0	496 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	GAS8-AS1	O95177	125 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	CRYGD	P07320	174 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	RBMY1D	P0C7P1	496 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	RBMY1A1	P0DJD3	496 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	RBMY1C	P0DJD4	496 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	IGLC3	P0DOY3	106 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	INSL3	P51460	131 aa		5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	POLR2K	P53803	58 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	SUMO2	P61956	95 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-231	ENST00000498751	RBMY1F	Q15415	496 aa	Known RBP	5.61	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms