RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 ZNF506Q5JVG8 444 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 PIK3CD-AS1Q5SR53 167 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 SPATA12Q7Z6I5 190 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 Q86TA4 180 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 SLC25A29Q8N8R3 303 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 LY96Q9Y6Y9 160 aa13.18□□□□□ -0.3
USP40-217ENST00000496298 TRAV9-2A0A087WT02 112 aa13.17□□□□□ -0.3
USP40-217ENST00000496298 TRBV6-4A0A1B0GX49 114 aa13.17□□□□□ -0.3
USP40-217ENST00000496298 WFDC10BQ8IUB3 73 aa13.17□□□□□ -0.3
USP40-217ENST00000496298 OR11H4Q8NGC9 324 aa13.17□□□□□ -0.3
USP40-217ENST00000496298 TCEAL7Q9BRU2 100 aa13.17□□□□□ -0.3
USP40-217ENST00000496298 ZFP30Q9Y2G7 519 aa13.17□□□□□ -0.3
USP40-217ENST00000496298 TRBV6-1A0A0K0K1D8 114 aa13.16□□□□□ -0.3
USP40-217ENST00000496298 SEC11BP0C7V7 166 aa13.16□□□□□ -0.3
USP40-217ENST00000496298 KRTAP10-2P60368 255 aa13.16□□□□□ -0.3
USP40-217ENST00000496298 DNLZQ5SXM8 178 aa13.16□□□□□ -0.3
USP40-217ENST00000496298 STOML3Q8TAV4 291 aa13.16□□□□□ -0.3
USP40-217ENST00000496298 CRIP1P50238 77 aa13.15□□□□□ -0.3
USP40-217ENST00000496298 NFE4Q86UQ8 179 aa13.15□□□□□ -0.3
USP40-217ENST00000496298 MBD3L1Q8WWY6 194 aa13.15□□□□□ -0.3
USP40-217ENST00000496298 FMC1Q96HJ9 113 aa13.15□□□□□ -0.3
USP40-217ENST00000496298 TNFRSF18Q9Y5U5 241 aa13.15□□□□□ -0.3
USP40-217ENST00000496298 A0A0D9SG52 128 aa13.14□□□□□ -0.31
USP40-217ENST00000496298 EVI2AP22794 236 aa13.14□□□□□ -0.31
USP40-217ENST00000496298 RHOHQ15669 191 aa13.14□□□□□ -0.31
USP40-217ENST00000496298 ZC2HC1AQ96GY0 325 aa13.14□□□□□ -0.31
USP40-217ENST00000496298 PRADC1Q9BSG0 188 aa13.14□□□□□ -0.31
USP40-217ENST00000496298 IL36BQ9NZH7 164 aa13.14□□□□□ -0.31
USP40-217ENST00000496298 ABCA13Q86UQ4 5058 aa13.13□□□□□ -0.31
USP40-217ENST00000496298 DNAH5Q8TE73 4624 aa13.13□□□□□ -0.31
USP40-217ENST00000496298 UMAD1C9J7I0 102 aa13.13□□□□□ -0.31
USP40-217ENST00000496298 MGST1P10620 155 aaKnown RBP13.13□□□□□ -0.31
USP40-217ENST00000496298 ASIPP42127 132 aa13.13□□□□□ -0.31
USP40-217ENST00000496298 ZFP2Q6ZN57 461 aa13.13□□□□□ -0.31
USP40-217ENST00000496298 NHLRC2Q8NBF2 726 aa13.13□□□□□ -0.31
USP40-217ENST00000496298 A8MWV9 139 aa13.12□□□□□ -0.31
USP40-217ENST00000496298 KRBOX1C9JBD0 128 aa13.12□□□□□ -0.31
USP40-217ENST00000496298 S100A4P26447 101 aaKnown RBP13.12□□□□□ -0.31
USP40-217ENST00000496298 PARLQ9H300 379 aa13.12□□□□□ -0.31
USP40-217ENST00000496298 MSRB1Q9NZV6 116 aa13.12□□□□□ -0.31
USP40-217ENST00000496298 APOBP04114 4563 aaKnown RBP13.12□□□□□ -0.31
USP40-217ENST00000496298 IGHV3-73A0A0B4J1V6 119 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 B4DEV8 164 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 BCL2L11O43521 198 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 LTAP01374 205 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 UBE2G1P62253 170 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 ZNF674Q2M3X9 581 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 CST9LP1Q5W188 147 aa13.11□□□□□ -0.31
USP40-217ENST00000496298 SH2D1AO60880 128 aa13.1□□□□□ -0.31
USP40-217ENST00000496298 FAM162BQ5T6X4 162 aa13.1□□□□□ -0.31
USP40-217ENST00000496298 UFSP1Q6NVU6 142 aa13.1□□□□□ -0.31
USP40-217ENST00000496298 Q6ZSN1 163 aa13.1□□□□□ -0.31
USP40-217ENST00000496298 C10orf126Q8N4M7 172 aa13.1□□□□□ -0.31
USP40-217ENST00000496298 SFT2D1Q8WV19 159 aa13.1□□□□□ -0.31
USP40-217ENST00000496298 IGHV3-38A0A0C4DH36 116 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 KANTRA0A1W2PQU2 76 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 PAGE4O60829 102 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 CRYGDP07320 174 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 LINC01556Q5JQF7 62 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 FAM213BQ8TBF2 198 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 ZNF471Q9BX82 626 aaPredicted RBP13.09□□□□□ -0.31
USP40-217ENST00000496298 PGPEP1Q9NXJ5 209 aa13.09□□□□□ -0.31
USP40-217ENST00000496298 ARMS2P0C7Q2 107 aa13.08□□□□□ -0.32
USP40-217ENST00000496298 ERVFC1-1P60608 527 aa13.08□□□□□ -0.32
USP40-217ENST00000496298 LGALSLQ3ZCW2 172 aaPredicted RBP13.08□□□□□ -0.32
USP40-217ENST00000496298 LINC01559Q495D7 138 aa13.08□□□□□ -0.32
USP40-217ENST00000496298 GTSF1LQ9H1H1 148 aa13.08□□□□□ -0.32
USP40-217ENST00000496298 SCRT2Q9NQ03 307 aa13.08□□□□□ -0.32
USP40-217ENST00000496298 TRAV8-6A0A0B4J262 113 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 H3BVH4 76 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 M0R036 132 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 EREGO14944 169 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 S100A9P06702 114 aaKnown RBP13.07□□□□□ -0.32
USP40-217ENST00000496298 LINC00694P0DN24 101 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 AKR1C3P42330 323 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 EIF5AP63241 154 aaKnown RBP13.07□□□□□ -0.32
USP40-217ENST00000496298 LELP1Q5T871 98 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 ATP6V0E2Q8NHE4 81 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 KRTAP4-5Q9BYR2 181 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 JPT2Q9H910 190 aa13.07□□□□□ -0.32
USP40-217ENST00000496298 A0A087WTM6 91 aa13.06□□□□□ -0.32
USP40-217ENST00000496298 TMUB2Q71RG4 321 aa13.06□□□□□ -0.32
USP40-217ENST00000496298 SYT8Q8NBV8 401 aa13.06□□□□□ -0.32
USP40-217ENST00000496298 SAMD10Q9BYL1 202 aa13.06□□□□□ -0.32
USP40-217ENST00000496298 GRIFINA4D1Z8 144 aa13.05□□□□□ -0.32
USP40-217ENST00000496298 IBA57-AS1B1ANH7 110 aa13.05□□□□□ -0.32
USP40-217ENST00000496298 H2AFB1P0C5Y9 115 aa13.05□□□□□ -0.32
USP40-217ENST00000496298 CDPF1Q6NVV7 123 aa13.05□□□□□ -0.32
USP40-217ENST00000496298 MLST8Q9BVC4 326 aa13.05□□□□□ -0.32
USP40-217ENST00000496298 RHODO00212 210 aa13.04□□□□□ -0.32
USP40-217ENST00000496298 OR10J3Q5JRS4 329 aa13.04□□□□□ -0.32
USP40-217ENST00000496298 SFRP2Q96HF1 295 aa13.04□□□□□ -0.32
USP40-217ENST00000496298 TPT1P13693 172 aaKnown RBP13.03□□□□□ -0.32
USP40-217ENST00000496298 Q9UF83 564 aa13.03□□□□□ -0.32
USP40-217ENST00000496298 TRAV1-1A0A0B4J248 108 aa13.02□□□□□ -0.33
USP40-217ENST00000496298 A0A1B0GV50 99 aa13.02□□□□□ -0.33
USP40-217ENST00000496298 SCO2A0A1W2PP80 73 aa13.02□□□□□ -0.33
USP40-217ENST00000496298 PFDN1O60925 122 aa13.02□□□□□ -0.33
USP40-217ENST00000496298 C14orf178Q8N769 122 aaPredicted RBP13.02□□□□□ -0.33
USP40-217ENST00000496298 MAPKAPK5-AS1Q8N8E1 139 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms