RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	HIST1H2BA	Q96A08	127 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	KRTAP4-5	Q9BYR2	181 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	ARL2-SNX15	V9GYD0	113 aa		4.89	□□□□□ -1.63
VPS52-221	ENST00000495755	DNAH8	Q96JB1	4490 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	MAP1LC3B2	A6NCE7	125 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	FABP5P3	A8MUU1	101 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	EVI2A	P22794	236 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	ZNF506	Q5JVG8	444 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	PIK3CD-AS1	Q5SR53	167 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755		Q86TA4	180 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	KCNRG	Q8N5I3	272 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	MAP1LC3B	Q9GZQ8	125 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	PGPEP1	Q9NXJ5	209 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	MSRB1	Q9NZV6	116 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	ZFP30	Q9Y2G7	519 aa		4.88	□□□□□ -1.63
VPS52-221	ENST00000495755	IGHV3-73	A0A0B4J1V6	119 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	TRBV6-1	A0A0K0K1D8	114 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	HMSD	A8MTL9	139 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	KRBOX1	C9JBD0	128 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	FHIT	P49789	147 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	ZNF345	Q14585	488 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	RHOH	Q15669	191 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	DNLZ	Q5SXM8	178 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	ZFP2	Q6ZN57	461 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755		Q6ZSN1	163 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	NHLRC2	Q8NBF2	726 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	OR11H4	Q8NGC9	324 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	MBD3L1	Q8WWY6	194 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	ZC2HC1A	Q96GY0	325 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	TCEAL7	Q9BRU2	100 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	PRADC1	Q9BSG0	188 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	IL36B	Q9NZH7	164 aa		4.87	□□□□□ -1.63
VPS52-221	ENST00000495755	HERC1	Q15751	4861 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755		A0A087WTM6	91 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	IGHV3-38	A0A0C4DH36	116 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755		A8MWV9	139 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755		B4DEV8	164 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	SH2D1A	O60880	128 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	LTA	P01374	205 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	CRYGD	P07320	174 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	SEC11B	P0C7V7	166 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	MGST1	P10620	155 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	S100A4	P26447	101 aa	Known RBP	4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	ASIP	P42127	132 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	ERVFC1-1	P60608	527 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	ZNF674	Q2M3X9	581 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	LINC01556	Q5JQF7	62 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	UFSP1	Q6NVU6	142 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	C10orf126	Q8N4M7	172 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	STOML3	Q8TAV4	291 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	FMC1	Q96HJ9	113 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	SAMD10	Q9BYL1	202 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	PARL	Q9H300	379 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	SCRT2	Q9NQ03	307 aa		4.86	□□□□□ -1.63
VPS52-221	ENST00000495755	TRAV8-6	A0A0B4J262	113 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755		A0A0D9SG52	128 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	GRIFIN	A4D1Z8	144 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	IBA57-AS1	B1ANH7	110 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	UMAD1	C9J7I0	102 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755		M0R036	132 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	EREG	O14944	169 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	BCL2L11	O43521	198 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	PAGE4	O60829	102 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	ARMS2	P0C7Q2	107 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	LINC00694	P0DN24	101 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	FUS	P35637	526 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	LGALSL	Q3ZCW2	172 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	LINC01559	Q495D7	138 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	FAM162B	Q5T6X4	162 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	LELP1	Q5T871	98 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	DMRTA1	Q5VZB9	504 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	CST9LP1	Q5W188	147 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	CDPF1	Q6NVV7	123 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755		Q8N1X5	172 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	MAPKAPK5-AS1	Q8N8E1	139 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	ATP6V0E2	Q8NHE4	81 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	SFT2D1	Q8WV19	159 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	GTSF1L	Q9H1H1	148 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	JPT2	Q9H910	190 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755		Q9UF83	564 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	BOLA1	Q9Y3E2	137 aa		4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	SRRM2	Q9UQ35	2752 aa	Known RBP	4.85	□□□□□ -1.63
VPS52-221	ENST00000495755	GAGE12J	A6NER3	117 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755		H3BVH4	76 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	S100A9	P06702	114 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	UBE2G1	P62253	170 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	GAGE1	Q13065	139 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	GAGE4	Q13068	117 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	GAGE5	Q13069	117 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	GAGE13	Q4V321	117 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	OR10J3	Q5JRS4	329 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	C14orf178	Q8N769	122 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	SYT8	Q8NBV8	401 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	FAM213B	Q8TBF2	198 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	SFRP2	Q96HF1	295 aa		4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	ZNF471	Q9BX82	626 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS52-221	ENST00000495755	VPS13B	Q7Z7G8	4022 aa		4.84	□□□□□ -1.64
VPS52-221	ENST00000495755	TMSB15B	A0A087X1C1	80 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	KANTR	A0A1W2PQU2	76 aa		4.83	□□□□□ -1.64
VPS52-221	ENST00000495755	LRCOL1	A6NCL2	159 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms