RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 DUSP14O95147 198 aaKnown RBP7.33□□□□□ -1.24
SYNE1-230ENST00000495090 TSHBP01222 138 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 S100A4P26447 101 aaKnown RBP7.33□□□□□ -1.24
SYNE1-230ENST00000495090 APRG1Q8IVJ8 170 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 C14orf178Q8N769 122 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-230ENST00000495090 EEF1AKMT3Q96AZ1 226 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 AJUBAQ96IF1 538 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-230ENST00000495090 A4D1N5 150 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 LINC01548A6NM66 108 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 OVOL1O14753 267 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 GATA3P23771 443 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 SFTA2Q6UW10 78 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 Q6ZQT7 251 aa7.33□□□□□ -1.24
SYNE1-230ENST00000495090 IGHV3-66A0A0C4DH42 116 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 IGHV3-33P01772 117 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 NHLRC4P0CG21 123 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-230ENST00000495090 RPL13AP40429 203 aaKnown RBP7.32□□□□□ -1.24
SYNE1-230ENST00000495090 POLR2KP53803 58 aaKnown RBP7.32□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE2BQ13066 116 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 ZNF876PQ49A33 203 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE2EQ4V326 116 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 Q6ZS46 218 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 DEFB124Q8NES8 71 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 C16orf92Q96LL3 132 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 FAM19A4Q96LR4 140 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 KIR2DL4Q99706 377 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE2DQ9UEU5 116 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 TP53TG1Q9Y2A0 90 aa7.32□□□□□ -1.24
SYNE1-230ENST00000495090 TRIOBPQ9H2D6 2365 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 CFAP47Q6ZTR5 3102 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 J3QQQ9 107 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 SNCGO76070 127 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 MGPP08493 103 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 TSPEAR-AS2P59090 65 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 CLEC19AQ6UXS0 136 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 OR10J6PQ8NGY7 276 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 TMEM263Q8WUH6 116 aaKnown RBP7.31□□□□□ -1.24
SYNE1-230ENST00000495090 KIF25-AS1Q9Y6Z4 181 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-230ENST00000495090 A0A0J9YX75 114 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 C9JAW5 83 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 VCYO14598 125 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 LGALS3P17931 250 aaKnown RBP7.31□□□□□ -1.24
SYNE1-230ENST00000495090 NDUFV3P56181 108 aaKnown RBP7.31□□□□□ -1.24
SYNE1-230ENST00000495090 SHISA2Q6UWI4 295 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 SS18L2Q9UHA2 77 aa7.31□□□□□ -1.24
SYNE1-230ENST00000495090 PKDREJQ9NTG1 2253 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 LEPROTO15243 131 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 ATP6V0E1O15342 81 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 IGHV1-69P01742 117 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 RNASE3P12724 160 aaKnown RBP7.3□□□□□ -1.24
SYNE1-230ENST00000495090 LINC00315P59091 139 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 ATXN8Q156A1 80 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 ECSCRQ19T08 205 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 ANXA2RQ3ZCQ2 193 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 C20orf173Q96LM9 149 aa7.3□□□□□ -1.24
SYNE1-230ENST00000495090 ZFHX4Q86UP3 3567 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 ROS1P08922 2347 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 TRBV6-5A0A0K0K1A5 114 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE12JA6NER3 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 SOCS3O14543 225 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE7O76087 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE12FP0CL80 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE12GP0CL81 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE12IP0CL82 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 GAGE4Q13068 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 MRPL23Q16540 153 aaKnown RBP7.29□□□□□ -1.24
SYNE1-230ENST00000495090 TMEM170BQ5T4T1 132 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 ZNRF2Q8NHG8 242 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 IGHV3OR16-13A0A075B7E8 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 IGHV3-74A0A0B4J1X5 117 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 TRBV30A0A0K0K1B3 111 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 TRBV27A0A0K0K1C4 114 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 SDHAF1A6NFY7 115 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 FAM90A27PA6NNH2 459 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 IGF1P05019 195 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 IFITM1P13164 125 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 Q8N1Y9 231 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 NCOR1O75376 2440 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 WDFY4Q6ZS81 3184 aa7.29□□□□□ -1.24
SYNE1-230ENST00000495090 TRBV10-2A0A0K0K1G8 114 aa7.28□□□□□ -1.24
SYNE1-230ENST00000495090 TMEM223A0PJW6 202 aa7.28□□□□□ -1.24
SYNE1-230ENST00000495090 B5MCH6 92 aa7.28□□□□□ -1.24
SYNE1-230ENST00000495090 LINC01620Q4KN68 170 aa7.28□□□□□ -1.24
SYNE1-230ENST00000495090 PRR30Q53SZ7 412 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-230ENST00000495090 IGHV3-49A0A0A0MS15 119 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 FAM223BA6NKX1 122 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 LGALS9O00182 355 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 EIF4EBP3O60516 100 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-230ENST00000495090 CRIP2P52943 208 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-230ENST00000495090 RHOHQ15669 191 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 NSUN5P1Q3KNT7 163 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 TTC32Q5I0X7 151 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 FAM223AQ8IWN6 122 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 TRAV4A0A0B4J268 109 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 TGFAP01135 160 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 EMP1P54849 157 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 SUMO4Q6EEV6 95 aa7.27□□□□□ -1.25
SYNE1-230ENST00000495090 TRPT1Q86TN4 253 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms